PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03488.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 319aa    MW: 34608.1 Da    PI: 7.0512
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03488.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.8e-2799149151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krie+   rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  Pahal.A03488.1  99 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 149
                     79*********************************************9986 PP
2K-box578.3e-201802611899
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++a+L++++ +    +R++ Ge+Le Ls++eLqqLe++Le +l ++ ++K++ +leqi+elq+k  +l een++Lr+++ 
  Pahal.A03488.1 180 HSKYANLNEQLAEASLRLRQMRGEELEGLSVEELQQLEKNLEAGLHRVLQTKDQQFLEQISELQRKSSQLAEENMQLRNQVS 261
                     345566666666666889************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.62391151IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-3091163IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-3691150IPR002100Transcription factor, MADS-box
CDDcd002651.50E-3892165No hitNo description
PRINTSPR004041.8E-2493113IPR002100Transcription factor, MADS-box
PROSITE patternPS00350093147IPR002100Transcription factor, MADS-box
PfamPF003192.9E-25100147IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-24113128IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-24128149IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.239176266IPR002487Transcription factor, K-box
PfamPF014866.0E-18182260IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPTCQSEQVP RLETPTRPPP SLPLSSLSLS LSLSLSPFAS HRITSQPPPP AGLLLLRPLP  60
PPPRVRSSSG ARLSAARALC VGGGEGSAGT MARERREIKR IESAAARQVT FSKRRRGLFK  120
KAEELSVLCD ADVALIVFSS TGKLSQFASS SMNEIIDKYN THSKNLGKAE QPSLDLNLEH  180
SKYANLNEQL AEASLRLRQM RGEELEGLSV EELQQLEKNL EAGLHRVLQT KDQQFLEQIS  240
ELQRKSSQLA EENMQLRNQV SQIPPSGKQV VADTENVIAE DGQSSESVMT ALHSGSSQDN  300
DDGSDVSLKL GLPGVAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-1891164174MEF2C
5f28_B2e-1891164174MEF2C
5f28_C2e-1891164174MEF2C
5f28_D2e-1891164174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0354200.0BT035420.1 Zea mays full-length cDNA clone ZM_BFb0060F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810223.11e-164MADS-box transcription factor 22
SwissprotQ9XJ661e-146MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A2T8KXX10.0A0A2T8KXX1_9POAL; Uncharacterized protein
STRINGSi017524m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]