PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 24492.4 Da PI: 6.1011 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.2e-18 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Pahal.A03446.1 35 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 84 69****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-30 | 34 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.575 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-11 | 35 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.50E-17 | 35 | 94 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-19 | 35 | 93 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.0E-34 | 35 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-9 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-9 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVKGGAHQLQ DAAADGNAAA AARQQGAGCG GGKRQYKGVR MRSWGSWVSE IRAPNQKTRI 60 WLGSYSTAEA AARAYDAALL CLKGSAADLN FPVHLPFHIP AAAMSPKSIQ RVAAAAAANA 120 GCSPLQAGAP YYPAAAAINA ATPPCSYGDA SSGASSPETG NAGQYYRTAH DDVDVTGDAD 180 LAALADIEAF FQSPKCMEYA MMDPCSSFFA PAPMATDAAG EWEEEGVRFS CFKLLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-15 | 24 | 92 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083532 | 1e-120 | BT083532.1 Zea mays full-length cDNA clone ZM_BFb0008I08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791560.1 | 1e-172 | ethylene-responsive transcription factor ERF013-like | ||||
TrEMBL | A0A2S3GTK3 | 1e-171 | A0A2S3GTK3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J02555.1.p | 1e-124 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03446.1 |