PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03431.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 366aa    MW: 40304.4 Da    PI: 5.0261
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03431.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.9e-16179238155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++GV++++++g+++A+++d  +   g  ++ k+++lg+++t+e+Aa+a++ a++k++g
  Pahal.A03431.1 179 SSFHGVTRHRWSGKYEAHLWDsSCRvEGrrRKgKQVYLGSYDTEEKAARAYDVAALKYWG 238
                     5799*****************877786666336*************************98 PP
2AP249.31.2e-15281332155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  Pahal.A03431.1 281 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 332
                     57****************9995.....234************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.06E-21179248No hitNo description
SuperFamilySSF541713.2E-18179248IPR016177DNA-binding domain
PROSITE profilePS5103219.585180246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-18180247IPR001471AP2/ERF domain
PfamPF008471.7E-12180238IPR001471AP2/ERF domain
SMARTSM003801.6E-29180252IPR001471AP2/ERF domain
PRINTSPR003671.4E-5181192IPR001471AP2/ERF domain
CDDcd000183.44E-22281340No hitNo description
SuperFamilySSF541712.03E-17281342IPR016177DNA-binding domain
PfamPF008471.7E-9281332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-19282341IPR001471AP2/ERF domain
PROSITE profilePS5103218.571282340IPR001471AP2/ERF domain
SMARTSM003802.2E-27282346IPR001471AP2/ERF domain
PRINTSPR003671.4E-5322342IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEESEEGVNL GKQMEEEKAA GESGDEGTIE RSHSINLNTV PPVAVEARST QENGETHGAG  60
VSGTKDSRTR EREQSGDADQ KKLPKCEQVD YESEVEGREN PADKAALVTV VGNEGHADYG  120
DDDERAQVLS IVKKDEPADE VGGSINPVPV TEAGCTEEKG AIVASAGISA VRPAGSRSSS  180
FHGVTRHRWS GKYEAHLWDS SCRVEGRRRK GKQVYLGSYD TEEKAARAYD VAALKYWGQN  240
TRLNFPISLY EKELEDIRDL SREECVTYLR RRSSCFSRGA SIYRGVTRRQ KDGRWQARIG  300
LVAGTRDIYL GTFKTEEEAA EAYDIAAIEI RGKNAVTNFD RSNYVDKGMH CIEGEGLRLL  360
MSKPE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205212GRRRKGKQ
2269290RRRSSCFSRGASIYRGVTRRQK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9574600.0EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817227.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ6PQQ37e-85AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2S3GT800.0A0A2S3GT80_9POAL; Uncharacterized protein
TrEMBLA0A2T7FCA60.0A0A2T7FCA6_9POAL; Uncharacterized protein
STRINGPavir.Ab02943.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-75AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]