PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 250aa MW: 28216.2 Da PI: 8.8758 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.9 | 5.4e-06 | 34 | 50 | 5 | 22 |
--SGGGGTS--TTTTT-S CS zf-CCCH 5 lCrffartGtCkyGdrCk 22 C f+++ G C++G+rC+ Pahal.A03182.1 34 VCTFYQK-GACSFGSRCR 50 5******.*********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.408 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0077 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.3E-7 | 5 | 62 | No hit | No description |
PROSITE profile | PS50103 | 13.497 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.003 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 4.5E-15 | 81 | 161 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.9E-10 | 90 | 156 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 6.90E-4 | 96 | 156 | No hit | No description |
Pfam | PF13639 | 2.6E-8 | 96 | 155 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 9.2E-7 | 97 | 154 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.297 | 97 | 155 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 121 | 130 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 14.202 | 184 | 213 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.028 | 184 | 212 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSKRVPCKFF LHGACFKGDY CEFSHDCNDR PDNVCTFYQK GACSFGSRCR NEHVEVRRNR 60 PQPATTAARV SSNSSQLLCK KNNRLLEALR KSEDIECGVC LDRVLSKPTA KERRFGLLSD 120 CDHSFCISCI RNWRSTSPTS GMDVNSTLRA CPICRKLSYY VVPSTTWYSS KEGKQEIVEG 180 YKAKLRSIDC KHFDFGKGTC PFGSSCFYKH AYRDGRLEEA LLNHNDADGA SAAIARLMRL 240 SYLLTRLHV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054550 | 0.0 | BT054550.1 Zea mays full-length cDNA clone ZM_BFc0152O03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798940.1 | 1e-123 | E3 ubiquitin-protein ligase makorin-like isoform X1 | ||||
Refseq | XP_025798941.1 | 1e-123 | E3 ubiquitin-protein ligase makorin-like isoform X2 | ||||
Swissprot | Q5ZA07 | 1e-93 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A2S3GSP7 | 1e-121 | A0A2S3GSP7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab03056.1.p | 1e-118 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 5e-84 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03182.1 |
Publications ? help Back to Top | |||
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