PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03123.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 288aa    MW: 29617.2 Da    PI: 7.387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03123.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-10202243955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  Pahal.A03123.1 202 AKNRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 243
                     69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-13195253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-12195250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-12195247No hitNo description
SMARTSM003537.1E-12199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-7202243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MALVREHAAY GGFDSAEAAA FDGLGSGHDA LLGLDAAALF AGGRFAGAAA YVAGGGMNTW  60
ACSGSASVLA FDRATAAVGD EECDAWIDAM DQSDGAAAAP EPRHAPAASV GFDAATGCFT  120
LTERASSSGG VGRPFGLLFP STSSSSSSPE RAAPARASQK RAYVDAVPQA VSAKKPCGAS  180
RKTSKAKSAP TVPTKDPQSL AAKNRRERIS ERLRTLQELV PNGTKVDLVT MLEKAISYVK  240
FLQLQVKVLA TDEFWPAQGG KPPEISQVRE ALDAILSSAS QQRGQLN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096621e-115AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822744.11e-176transcription factor bHLH83-like
TrEMBLA0A2S3GSI80.0A0A2S3GSI8_9POAL; Uncharacterized protein
STRINGSb04g030230.11e-127(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.17e-53ROOT HAIR DEFECTIVE6