PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03121.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 296aa    MW: 30377.7 Da    PI: 5.4304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03121.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10211252955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  Pahal.A03121.1 211 AKNRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 252
                     69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-12204256No hitNo description
Gene3DG3DSA:4.10.280.104.3E-12204259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13206263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-12208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-7211252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MALVREHGGY GGYDAGGADA FDALGYGHDA LQGFDAAASL FGGGGSHAGA GYVADSGNVC  60
LPPGARASSV LAFDRAAAAA AVSGEEEDEE RDAWIDAADR SYGDSAAAEA RSLAVSVGFD  120
AATGCFTLTE RAASSGGAGR AFGLLFPSTA ADAASPERAA PVRASQKRTY VGVEPPADVS  180
PKKHCGAGRK ATSKAKSAPT MPTKDPQSLA AKNRRERISE RLRTLQELVP NGTKVDLVTM  240
LEKAISYVKF LQLQVKVLAT DEFWPAQGGT APEISQVREA LDAILSSASQ RGQLN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096621e-105AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822733.10.0putative transcription factor bHLH086
TrEMBLA0A2S3GSW50.0A0A2S3GSW5_9POAL; Uncharacterized protein
STRINGPavir.J04215.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.15e-54ROOT HAIR DEFECTIVE6