PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03051.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 231aa MW: 25454.9 Da PI: 7.7285 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 50.4 | 4.8e-16 | 5 | 35 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++AtPk++l+lm++kgLtl+h+kSHLQkYRl Pahal.A03051.2 5 HEATPKSVLRLMGMKGLTLYHLKSHLQKYRL 35 78****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 4.1E-10 | 5 | 36 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.8E-14 | 5 | 36 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-5 | 6 | 37 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 2.8E-24 | 80 | 124 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MIVMHEATPK SVLRLMGMKG LTLYHLKSHL QKYRLGKQSK KDTGLEASRG AFAAQGINFS 60 APVPPSIPST AGNNTGETPL ADALKYQIEV QRKLHEQLEV QKKLQMRIEA QGKYLQTILE 120 KAQNNLSYDA TGAANLEATR SQLTDFNLAL SGFMDNVSQA CEQNNGELAK AMTEDNLRAS 180 NLGFQLYHGV HDGEDVKCTP DEGLLLLDLN IRGGYDHRST ADLKMNQHMR * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808925.1 | 1e-165 | myb family transcription factor PHL11-like | ||||
TrEMBL | A0A2T7FAX8 | 1e-170 | A0A2T7FAX8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00783.1.p | 1e-159 | (Panicum virgatum) | ||||
STRING | Si018049m | 1e-160 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 2e-44 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03051.2 |