PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | DBB | ||||||||
Protein Properties | Length: 265aa MW: 27657 Da PI: 6.2313 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.6 | 9.3e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC C H+ H+ Pahal.A02748.1 4 QCDVCAAEAASVFCCADEAALCGACDRRVHRAnklagkHR 43 7*****************************7677777776 PP | |||||||
2 | zf-B_box | 29.8 | 1.2e-09 | 64 | 105 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++ C+ ++ek+ lfC++++ lC+dC ++ H Ht Pahal.A02748.1 64 PPLCDICQEKRGLLFCKEDRAILCRDCDVSVHTAseltmrHT 105 689*****************************5566777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.741 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.5E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.12E-7 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.2E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.783 | 62 | 109 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.9E-14 | 62 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.4E-8 | 63 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.14E-10 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCGACDR RVHRANKLAG KHRRFSLLNP APPSSSPGQQ 60 QPPPPLCDIC QEKRGLLFCK EDRAILCRDC DVSVHTASEL TMRHTRFLLT GVRLSAEPAA 120 CPSPPSEDEN SSGSFAPPPA PATSHGSDSS SISEYLTKTL PGWHVEDFLV DEAAAAAAAA 180 ASIGVSADAS YQGGPPRIGG VPDGGYSAWM AQEQLFGDSA AAGGARASRE RWVPQMMYGS 240 PELAAVAGSK RSRTAASPAA YSYW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968715 | 1e-143 | EU968715.1 Zea mays clone 323650 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792349.1 | 0.0 | B-box zinc finger protein 20-like | ||||
Swissprot | Q9LQZ7 | 8e-55 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2S3GRL7 | 0.0 | A0A2S3GRL7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa01111.1.p | 1e-137 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-47 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02748.1 |