PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02400.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 946aa    MW: 105544 Da    PI: 8.7789
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32.1e-113203981397
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +  l +p   a +      +++ + led++ r+ +v+l  +   ++  + +GW+ Fv+++ +k g+f++F+++ +++f   v+vf
  Pahal.A02400.1 320 EEFLLIPPAVAHKL--TDLSNQHVYLEDSEERRSKVRL--SVVNDSLAFHQGWNIFVSDHSIKRGEFLLFEYIATKTF--SVRVF 398
                     45588898888555..4445668***************..555566889************************98888..77776 PP
2B332.61.4e-108589271182
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                     +++++l lpk+  ++ ++k +    + l+d+  r W v +    ++  + +t+GW++Fv an+L++gD + +
  Pahal.A02400.1 858 TTRKWLELPKSLPNAVKQKRHDRNVILLNDPMKRLWPVLY--HENPVFVGFTAGWRNFVAANNLQAGDLCDL 927
                     456679999999888876766777888999**********..***************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.715308401IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-14310401IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-10311398No hitNo description
SMARTSM010193.4E-8311401IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-15311401IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-9316398IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-12848938IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.842848945IPR003340B3 DNA binding domain
SMARTSM010190.011849944IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-11855930IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-8858928IPR003340B3 DNA binding domain
CDDcd100173.70E-10859944No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 946 aa     Download sequence    Send to blast
MSGAAPDAAC RKRLRSHDST MIKIQSDDNE EGKKMSGGGS EVKNRKTSID AFLEKGKQKE  60
GRTNSNKNMM ADDQEREERI IWNGHHKVKS TKKVSTASPE KMKKQKLCNA NNKKKMQIDD  120
DEEGKNRHNG DHKLTNRKES PTLCEKDKNK GKLNKTHKEK MWAADRKERK ILSRHNSIKS  180
GEVSTALFGK EKKGKRLNKT NNEELQRDED EENAPFIPVV KEKRMRPSES TEAMMCHEKT  240
NRRSVSSIVS KEKKIDTSSG SKYKKRKRDH TLPKKGKRSD NKIHSGRVQE KKICGGGKEK  300
NKHTPFASFA FFKFIYNRFE EFLLIPPAVA HKLTDLSNQH VYLEDSEERR SKVRLSVVND  360
SLAFHQGWNI FVSDHSIKRG EFLLFEYIAT KTFSVRVFGM NSHERLCFKK GPKRVQHGVG  420
SGPVPQDNNN ENYACMRSQV KTAILISDSV ASAHNEDVVN LTTSDADSTH HVTINTNKDL  480
ERVQSGVGNL PDGECGTKCI SPACNEGKTS SEIIVNDAAP LMHENDGRVG NELQVHDLDE  540
DLIRKQGINC IPLGSIIAVE KHQIHSTMNI SQNFCRKYAA AGGFRCLEKW WRAGIVNSRA  600
ALDGTVLTEP ENTEKTDSKL VDGYGSIGLN TVDEYFCSEG NHTHVPPVFT MAVKGPLSAD  660
RVSKCRHGET EIDHSINEKC GGAAIQIKTQ GEQLEPVGSI VNSQRNNIPV SANAVVPGKY  720
SAIGLNPVGP EVTCAIVEPM LTVPVEKPSS PDEISKYESS RTEIDHNVNG KGTIVQLETK  780
VDQVEPVGSS VCSQSSNNAT YGSCVAAHVS EHCFSKQEGR KSINCAVQES LLPMKDKILE  840
LDDHSLLKFS LQLCVPDTTR KWLELPKSLP NAVKQKRHDR NVILLNDPMK RLWPVLYHEN  900
PVFVGFTAGW RNFVAANNLQ AGDLCDLIKE PDDDELVYSV LITRQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809292.10.0B3 domain-containing protein Os02g0598200-like
RefseqXP_025809300.10.0B3 domain-containing protein Os02g0598200-like
TrEMBLA0A2S3GR500.0A0A2S3GR50_9POAL; Uncharacterized protein
STRINGPavir.Aa01439.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.14e-09B3 family protein