PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 348aa MW: 39343.1 Da PI: 7.9419 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.0004 | 65 | 87 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H +H Pahal.A02093.1 65 CSyeGCGKTFFDAGALRKHAHVH 87 77779**************9887 PP | |||||||
2 | zf-C2H2 | 15.1 | 6.4e-05 | 92 | 116 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ +Cgk F ++s LkrH H Pahal.A02093.1 92 YICHyeNCGKKFLDSSKLKRHFLIH 116 89*******************8877 PP | |||||||
3 | zf-C2H2 | 21.8 | 4.8e-07 | 122 | 146 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nLk H++tH Pahal.A02093.1 122 FVCPheGCGKAFSLDFNLKAHMKTH 146 89**********************9 PP | |||||||
4 | zf-C2H2 | 19.2 | 3.3e-06 | 152 | 177 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ Cg++F++ s L+ Hir H Pahal.A02093.1 152 HVCQypECGRRFTQESKLRAHIRAqH 177 689999*****************888 PP | |||||||
5 | zf-C2H2 | 15.6 | 4.8e-05 | 221 | 246 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+k + + + L+ H+++ H Pahal.A02093.1 221 YVCPyeGCDKAYIHEYKLNLHLKKeH 246 99*********************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-13 | 59 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.762 | 63 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0032 | 63 | 87 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.01E-6 | 64 | 88 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 65 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.2E-14 | 90 | 112 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.066 | 92 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 92 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.61E-14 | 103 | 155 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-20 | 113 | 149 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.321 | 122 | 151 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.3E-4 | 122 | 146 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 124 | 146 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.8E-8 | 151 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.24 | 152 | 177 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0047 | 152 | 177 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.49E-7 | 154 | 177 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 154 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-9 | 213 | 243 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.49E-7 | 216 | 243 | No hit | No description |
PROSITE profile | PS50157 | 8.891 | 221 | 251 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0028 | 221 | 246 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 223 | 246 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MQAAARRRFR WVKEWVPQDL VVAGGPCALF KWVREDRLAA LKAKDKEQGA ESAIPEPNTE 60 VLFLCSYEGC GKTFFDAGAL RKHAHVHGER QYICHYENCG KKFLDSSKLK RHFLIHTGEK 120 NFVCPHEGCG KAFSLDFNLK AHMKTHSADN YHVCQYPECG RRFTQESKLR AHIRAQHEKV 180 VGLHNPGPST MNHSALGDYH QPPKPVKASA TPPAPSAERP YVCPYEGCDK AYIHEYKLNL 240 HLKKEHPNHY QDGGPQGTAP SSKRKSSNRS KPDILTRMPP TKIPKRKGGY AAPLPALSVP 300 EEHRWSRKVT YEDDSEETEE EGDNNVEDGW RYNKAASSDD EETEDEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 4e-34 | 56 | 173 | 2 | 114 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966893 | 0.0 | EU966893.1 Zea mays clone 297982 transcription repressor TRM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810580.1 | 0.0 | zinc finger transcription factor YY1 | ||||
Swissprot | Q2V3L3 | 1e-105 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | A0A2S3GPU1 | 0.0 | A0A2S3GPU1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab01903.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2094 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 1e-104 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02093.1 |
Publications ? help Back to Top | |||
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