PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 252aa MW: 27041.1 Da PI: 9.2611 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.5 | 2.7e-16 | 11 | 48 | 3 | 40 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i n+s r tf kRr+g++KKA+EL +LC+++v v ++ Pahal.A02021.1 11 IANDSTRRATFKKRRKGLMKKASELATLCGVDVFVAVY 48 89********************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.23E-21 | 1 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.815 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.4E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.23E-29 | 2 | 86 | No hit | No description |
PRINTS | PR00404 | 9.2E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-17 | 11 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MARKKVALQW IANDSTRRAT FKKRRKGLMK KASELATLCG VDVFVAVYVE GEAQPEVWPD 60 APGEAERIAA RFKAVPDLDQ CKKKLDMEGL LRQQNDKSRD QLHKAQLENR ERERQLLLHD 120 AIAGRRPGLV GLSVEQVVTL GLMVEQRIQA VMDAIARLQG EGHDLPAATA PPQPPLAPCS 180 TGAGAGRRDI MMPQAPHPQG WMMAVGDTRA PAYSGFIGAG GTSAGGDMPL QFSGMGFGFA 240 GPDAGQSFPS M* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVALQWIANDSTRRATFKKRR |
2 | 21 | 25 | KKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821492.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2S3GPS4 | 0.0 | A0A2S3GPS4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa01999.1.p | 1e-113 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-25 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02021.1 |