PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01964.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 511aa    MW: 56637.2 Da    PI: 4.6272
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01964.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.9e-34781702103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++++++l+ +isw + gnsfvv+d+++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+ll++
  Pahal.A01964.1  78 FLSKTYDLVSEPALDGVISWGAAGNSFVVWDPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRDSKHLLKR 163
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r++s+
  Pahal.A01964.1 164 IVRRRSS 170
                     ***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-3774167IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.7E-3374167IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.1E-5574167IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3078167IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1678101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-16116128IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340117141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-16129141IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDRTRPDAGG SNPDAPYCAA AALLLEPKLE DEELPLRQLA SPGPFVPLDQ LMPGPEPAVA  60
VPPRPLEALL QGPQLPPFLS KTYDLVSEPA LDGVISWGAA GNSFVVWDPS TFARDVLPHN  120
FKHNNFSSFV RQLNTYGFRK VHADRWEFAH EDFLRDSKHL LKRIVRRRSS PTQQSSIQHG  180
SSSGESNLDP ELHTLRREKN ALLEEVARLK QEHRQTIEQM STLNNRLESA EDRQKQMVSF  240
LAKLLQNPSF VRQLKLHREQ KEIDSSRVKR KFLKHVPHGS IESESSSQYG GESGSHFPAS  300
SPMAISAHDD IAELQNFLLE DDDLNFGMDP DNIELDRVEQ LDDIGALVQG FDTQEELELG  360
SGAELLEMPP ASGPLGQDPT IGRSKGKSEL CPRLDAISSE ASYLGSISDT MGALSGTMLG  420
TASTMMDADE EQMWGVDASA PLQSTCSGSS QQTFSRLASD PYLMDIANKP EKFWDLDFQT  480
LDQGDLQLDK CAIDDPTLHQ RQQQRNMKDP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-247017011123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813039.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A2S3GQ450.0A0A2S3GQ45_9POAL; Uncharacterized protein
STRINGPavir.Ab01320.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.13e-70heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]