PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01815.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 490aa MW: 53216.6 Da PI: 4.9477

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01815.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.1	5.2e-16	382	427	7	52
RWP-RK 7 ledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +ed+ + +++ kdAAkeL++++T LKr CR+++ +RWP Rki s+ Pahal.A01815.1 382 MEDVLNRMHMTRKDAAKELNISATSLKRLCRKNNTNRWPGRKIISI 427 67888899***********************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.163	367	447	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-15	382	426	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MSDESYDIDG VSRFLQTPPP ESHLLAVTAA DVEPAAPPVG APQDPPAGVH QVGLVLQTPP 60 LNPEPAPANN VGNRQAPTMD VEPPPPPPPR DPVPAARATT DPTPSFEALF DDIVLPDLGT 120 MSLYDEFMDD GDDEEVEALI RSVEDAGNTG ALAEHSVPPA EEDLDFVPFV RGQLDCSNCR 180 SVREVLHESA NPKLHFAVHV ADPGTFQHAI FDRTYIDADG QIILNEMFYL DFRQRTHEWV 240 KEFIANTVEM LMEDTSGQLM KDSSSAFHSA VCTNASTPAE NDAHRELELD MLKHMFSSPT 300 ARTEAVAPQF APEAPQPVRR AEENSNADGS LLGAANWHGA AGLSRPAILE SFQVAVQDHG 360 VGSGTSASHL AKQRKRTSGF PMEDVLNRMH MTRKDAAKEL NISATSLKRL CRKNNTNRWP 420 GRKIISINNK IKKLEEAARK NVGMIGLLAF KEKLDKLKLE RAQLYSSVVR GVQENEKHNG 480 GGAGSSGSK*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MSDESYDIDG VSRFLQTPPP ESHLLAVTAA DVEPAAPPVG APQDPPAGVH QVGLVLQTPP  60
LNPEPAPANN VGNRQAPTMD VEPPPPPPPR DPVPAARATT DPTPSFEALF DDIVLPDLGT  120
MSLYDEFMDD GDDEEVEALI RSVEDAGNTG ALAEHSVPPA EEDLDFVPFV RGQLDCSNCR  180
SVREVLHESA NPKLHFAVHV ADPGTFQHAI FDRTYIDADG QIILNEMFYL DFRQRTHEWV  240
KEFIANTVEM LMEDTSGQLM KDSSSAFHSA VCTNASTPAE NDAHRELELD MLKHMFSSPT  300
ARTEAVAPQF APEAPQPVRR AEENSNADGS LLGAANWHGA AGLSRPAILE SFQVAVQDHG  360
VGSGTSASHL AKQRKRTSGF PMEDVLNRMH MTRKDAAKEL NISATSLKRL CRKNNTNRWP  420
GRKIISINNK IKKLEEAARK NVGMIGLLAF KEKLDKLKLE RAQLYSSVVR GVQENEKHNG  480
GGAGSSGSK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002444338.1	1e-144	uncharacterized protein LOC8070087
TrEMBL	A0A2S3GNM3	0.0	A0A2S3GNM3_9POAL; Uncharacterized protein
STRING	Pavir.Ab01364.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14429	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	7e-06	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.A01815.1