PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01539.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 325aa MW: 35562.4 Da PI: 7.441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01539.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	6.2e-10	36	85	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRd++N+ f+eL l ++ ++++Ka+iL +++ +k+L Pahal.A01539.1 36 RKVQKADREKMRRDKLNEQFQELGNTLDPD----RPRNDKATILGDTIQMLKDL 85 5677889******************997....799*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-14	32	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.49E-7	33	89	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-13	34	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.805	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-7	36	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-7	41	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MDPHGRQTPE DGFFHPRDAD LSQRTECKAQ GPSSTRKVQK ADREKMRRDK LNEQFQELGN 60 TLDPDRPRND KATILGDTIQ MLKDLTSQVN KLKAEYTSLS EEARELTQEK NELRDEKASL 120 KSEVDNLNNQ YQQRMRVLYP WAGMEPSVVI GPPPAYPYPV PLPIPSGSVP MHPQLQAYPF 180 FRSQTSGTIP NACTPYMAYT QPCHPPNDQP SNQLNSPVAH SSSHRSNSPG RDCRSKSSTL 240 QQVSCGVRST GVGDVATDLE LKTPGSSGPS HSEITNKDAS FDSKTKKQCI KQINGSTLTE 300 GTSSSRCSSS GPPDVSNSVG DGCL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815621.1	0.0	transcription factor bHLH121 isoform X3
Swissprot	Q9LT23	8e-70	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2S3GP78	0.0	A0A2S3GP78_9POAL; Uncharacterized protein
STRING	Si017804m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11767	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-69	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.A01539.1

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]