PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01483.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 345aa    MW: 36630.4 Da    PI: 9.9545
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01483.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29265322359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+  +p ++++tYeg+H+h+
  Pahal.A01483.1 265 DDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGEPAMLIVTYEGDHRHD 322
                     99***********************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-16213261IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.5E-31251322IPR003657WRKY domain
PROSITE profilePS5081130.354258324IPR003657WRKY domain
SuperFamilySSF1182901.83E-25259323IPR003657WRKY domain
SMARTSM007744.9E-34263323IPR003657WRKY domain
PfamPF031064.8E-25265321IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MILPTIRRPL CPPLTFPISL LRDVLLASRP GLASCSLEMI TIDDLMSCGG GAPVVPGGDD  60
QASTTPRRRQ MMVAVGDHQL TVSRIRTAVS MLGRRTGHAR FRRGPAAVVV ENPSSLPDRQ  120
QPSGSAAAPG VPLDLVDFVK GRGRDEAAFS ASASGDSSSL PSTTLTSLTA GEGSVSNGRF  180
PPVSGHAAGT PAVSMLQQHA ASDYYYTPGA APRSKCADRA RSENDAGGGK AHAGRCHCSK  240
KRKSRVRRVV RVPAISSRNA DIPPDDYSWR KYGQKPIKGS PYPRGYYKCS TVRGCPARKH  300
VERDPGEPAM LIVTYEGDHR HDCQQDRGDA DAAAAPPEHM STNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20251322272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946851e-111FP094685.1 Phyllostachys edulis cDNA clone: bphyem111b06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825254.10.0WRKY transcription factor WRKY51-like
SwissprotQ6IEN13e-64WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLA0A2T8KW470.0A0A2T8KW47_9POAL; Uncharacterized protein
STRINGPavir.Aa02610.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-50WRKY DNA-binding protein 11