PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01377.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 390aa    MW: 40571.8 Da    PI: 7.4516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01377.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13118168255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Pahal.A01377.1 118 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---YIKRGDQASIIGGVVDYIKELQ 168
                     689*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-17116190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-13118179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.38E-14118172No hitNo description
PfamPF000109.6E-11118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-12122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGDGAMCELL VDDHSELRHV SGAEDLFSIL ETWEECMNGG GGGGGGSAAA MPAYSQSSTG  60
GSESAGAVAG ARPTANGRRR AGDEEKGVGR GAPAQKKQKG SSTAAAAQDA AADEGAVKMS  120
HIAVERNRRK QMNEHLAVLR SLMPCFYIKR GDQASIIGGV VDYIKELQQV LRSLEAKKHR  180
KAYAEQVLSP RPAVSAASPR PLLKSTPPLS PRVAVPISPR TPTPGSPYKP SGGGGGAGSS  240
RLSHPAAAAY MIPSPAMTPT TSSSSSSYAH DHHQQHYPTT QPYLPTLDSL VTELAAQAAG  300
GRPAAAGLAL PDVRVEFAGP NLVLKTVSHR APGQALKIIA ALESLSLEIL HVSVSTLDDT  360
MVHSFTIKIG IECELSAEEL VHEIQQTFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17798RRRAGDEEKGVGRGAPAQKKQK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9758961e-111EU975896.1 Zea mays clone 504696 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.10.0transcription factor SPEECHLESS-like
TrEMBLA0A2S3GNK20.0A0A2S3GNK2_9POAL; Uncharacterized protein
STRINGPavir.Ab01030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.15e-40bHLH family protein