PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00660.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 440aa    MW: 47121.2 Da    PI: 8.8996
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00660.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.8e-11120160343
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                     + k  rr+++NReAAr+sR+RKka+i++Le+    L++  +
  Pahal.A00660.3 120 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 160
                     67999*************************86555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.4E-5118171IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-8118164No hitNo description
PROSITE profilePS502178.979120164IPR004827Basic-leucine zipper domain
PfamPF001701.0E-8121160IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-7122165No hitNo description
PROSITE patternPS000360125140IPR004827Basic-leucine zipper domain
PfamPF141444.7E-27206285IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAEFDQALFL YLNGQDQTSA IIQDQPQTLN IFPSQPMHVV EPAPPKGSML GTNNTTPNAG  60
AGPSSKRAPP SSNNAVPPAG GSKKDGKPAA VKREAGSSGG AMGSGTPSTS NQQEGPRTPD  120
AKTLRRLAQN REAARKSRLR KKAYIQNLET SRIRLSQLEQ ELHRSRNQGA VFGGGVLSGG  180
NGGLSPEAAW FDMEHARWQE EDGKMMRHLR AALEAEEHAA APPAAEAQLR QMVDAAAAHH  240
GLLAELKAAV ARADAFHLVS GAWVSAAERC FLWIGGFRPS ELIKVAVRHA EPLTEPQAMG  300
VCGVQQWARE AEAALDHELQ AMHRSVSEAV SSDAAALLCP YSDVPGYMAT MSLAISKLAS  360
LEAFVRQADA LRLQALHRLP QILTARQSAR CFLAIADYSH RLRALSELWH TRPRHEPPVT  420
TAAAGSSHGP PYQSRDGLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791992.10.0transcription factor TGAL9-like isoform X2
SwissprotQ52MZ21e-138TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A2S3GMJ40.0A0A2S3GMJ4_9POAL; Uncharacterized protein
STRINGPavir.J04905.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.32e-93bZIP family protein