PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 167aa MW: 18316.1 Da PI: 11.5098 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.1 | 2e-12 | 30 | 71 | 8 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 r+v fs r+g++KKA +v ++a avi+fs+ gk y + Pahal.A00412.1 30 ERHVCFSEHRHGLFKKATKFCVRTGAHLAVIMFSPAGKPYSF 71 69***********************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.0E-10 | 12 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.03 | 12 | 75 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-16 | 15 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-15 | 29 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MAGGERKRKD TLGLQKIEIK RQAHRVPREE RHVCFSEHRH GLFKKATKFC VRTGAHLAVI 60 MFSPAGKPYS FGHPSVNATV ERNHDPGSYV PLARETTHPA VLYEYGSEGE RLAKAIQAGG 120 AAAGRARTVS EVRGRRRRRV PINNPNRGRG GLLCKILGGF IKNIGS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806000.1 | 1e-118 | uncharacterized protein LOC112884711 | ||||
TrEMBL | A0A2T7F292 | 1e-108 | A0A2T7F292_9POAL; Uncharacterized protein | ||||
STRING | Si019299m | 8e-30 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13309 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-18 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00412.1 |