PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00259.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 1145aa    MW: 126570 Da    PI: 6.4807
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00259.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.83.2e-21140241199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d +  +W++++i+r++++r++lt+GW+ Fv  ++L +gD+v+F   ++++
  Pahal.A00259.1 140 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfNMQPPA-QELQARDIHDTVWTFRHIFRGQPKRHLLTTGWSLFVGGKRLFAGDSVIFV--RDER 231
                     99*****************************9555544.49************************************************..4577 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  Pahal.A00259.1 232 QQLLLGIRRA 241
                     888****997 PP
2Auxin_resp117.31.2e-38266349183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+   rr++Gt++g+sdldpvrW+nS+Wr+L+
  Pahal.A00259.1 266 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGMRRYMGTITGISDLDPVRWKNSQWRNLQ 349
                     79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-40129269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-39133255IPR015300DNA-binding pseudobarrel domain
CDDcd100179.88E-18139231No hitNo description
PfamPF023628.3E-19140241IPR003340B3 DNA binding domain
PROSITE profilePS5086311.491140242IPR003340B3 DNA binding domain
SMARTSM010193.2E-20140242IPR003340B3 DNA binding domain
PfamPF065071.6E-33266349IPR010525Auxin response factor
PROSITE profilePS5174529.02110111095IPR000270PB1 domain
PfamPF023094.4E-910111096IPR033389AUX/IAA domain
SuperFamilySSF542773.34E-710281090No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1145 aa     Download sequence    Send to blast
MKPSPASSGV APAAAAASAG GAPPEGERKA PAINADLWYA CAGPLVSLPP VGSLVVYFPQ  60
GHSEQVAASM QKDIDAHVPS YPNLPSKLIC LLHSVTLHAD PDTDEVYAQM TLQPVNTYGK  120
EALQLSELAL KHARPQMEFF CKTLTASDTS THGGFSVPRR AAEKILPPLD FNMQPPAQEL  180
QARDIHDTVW TFRHIFRGQP KRHLLTTGWS LFVGGKRLFA GDSVIFVRDE RQQLLLGIRR  240
ASRQPTNISS SVLSSDSMHI GVLAAAAHAA ANNSPFTIFY NPRASPTEFV IPFAKYQKAL  300
YSNQISLGMR FRMMFETEEL GMRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESAAGER  360
RNRVSMWEIE PIAAPFFICP QPFFGVKRPR QSDDESSEME NLFKRTMPWL GEEICLKDAQ  420
TQNTTMPGLS LVQWMNMNRQ QSSTLANTGI QSEYIHTLSN PAMQNLGATE LARQLYVQSH  480
LLQQNSAQLN ASKLPQQMQP INELSKGVLS FNQLDAISNQ EQKQEAGNQQ RQQQTVSQAI  540
PLSQAQATLV QAQVIVQNQM QQQQQQQQQQ QQQPQQPSPT KNQQGTSNQQ LFLSQQQQDQ  600
NLQLQQQQQL LLKQLQRQQQ HNQQLNKLPG QLMNMAGQQT QLSDQELQLQ LLQKLQQQSL  660
ISQPAVTLSR LPLIQEQQKL LLDIQQLSSS RSLAQQRITP QQDSKVSLQA SSAPPPMKQE  720
QQQKLSQKQV ALADVSDVAF PPISSTNVAG KAGSPLIIPG AAQSVLTEEI PSCSTSPSTA  780
NGNHLAHPTT GRNEHCKVNI EKVPQSSALM SIPTSVEAVT AAPIMGKDLS KLNHNVKGNV  840
ITSKSPTSGT GPDNLLNNVP STDNLETASS ATSLWPTQTD GLLHQGFPTS TFNQQQMFKD  900
TLPDVEIQDV DPTNNAFFGI SNDGPLGFPM ETEGLLVSAI NPVKCQTHMS TDAENNYHIQ  960
KDAQQEISTS MVSQSFGHSD IAFNSIDSAI NDGALLNRNP WPPVPPPQRM RTFTKVYKRG  1020
AVGRSIDIGR YSGYEELKHA LARMFGIEGQ LEDRQRIGWK LVYKDHEDDI LLLGDDPWEE  1080
FVNCVKCIRI LSPQEVQQMS LEGDLGNNVL SNQACSSSDG GNAWRPHCDQ NPSNPSIGFY  1140
DQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1632637045388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045350.0HM004535.1 Zea mays auxin response factor 20 (ARF20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801433.10.0auxin response factor 5-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2S3GLJ30.0A0A2S3GLJ3_9POAL; Auxin response factor
STRINGSi016147m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19