PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl017859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24233.6 Da PI: 6.8902 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.3 | 4.2e-23 | 12 | 61 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien+ r+ +f kRr g++KKAeELS+LCda v v++fs gkl eys+ Pgl017859 12 RIENEASRNASFRKRRRGLMKKAEELSILCDASVGVVVFSAAGKLSEYSN 61 8***********************************************95 PP | |||||||
2 | K-box | 48.6 | 3.5e-17 | 105 | 185 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +e+++L + + L++e R++ Ge+L+ ++l eLq+L+++Le +lk++ ++ el ++++ e q k el ee+ +Lr++l+ Pgl017859 105 TEVTRLHQYHQVLEHEYRQMSGENLGGINLGELQELQDHLELGLKRVQLRQCELHTKKMAEIQSKGLELVEEHIMLRQQLK 185 799***************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-28 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.245 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.72E-30 | 4 | 75 | No hit | No description |
SuperFamily | SSF55455 | 7.59E-26 | 5 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-22 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-22 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-22 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-22 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.922 | 100 | 190 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.3E-14 | 104 | 184 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRGLGKTEI RRIENEASRN ASFRKRRRGL MKKAEELSIL CDASVGVVVF SAAGKLSEYS 60 NTSELKMIIE RYMKYLGHAE NMSVSYSWVR NDNPGSGFQQ MDAITEVTRL HQYHQVLEHE 120 YRQMSGENLG GINLGELQEL QDHLELGLKR VQLRQCELHT KKMAEIQSKG LELVEEHIML 180 RQQLKAFFER EEAPDEATSQ LETLPQYKFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 27 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.30896 | 0.0 | stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K0M7C6 | 9e-68 | A0A0K0M7C6_PINTB; MADS1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 2e-19 | MIKC_MADS family protein |