PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017734
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 339aa    MW: 39325.5 Da    PI: 5.9127
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55347745PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix651.6e-2014802586
   trihelix 25 k...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86
               +   +kk++W++vsk+m+e+g+++sp+qC++k+++lnkryk+++++ +++  +++++++ +++d+++
  Pgl017734 14 SgilQKKGKWKSVSKVMQEKGCSVSPQQCEDKFNDLNKRYKRLNDILGRGgiACKVVENPSLLDNMD 80
               24449******************************************999777***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1515105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
XGGSECEDGS KKKSGILQKK GKWKSVSKVM QEKGCSVSPQ QCEDKFNDLN KRYKRLNDIL  60
GRGGIACKVV ENPSLLDNMD HLSPKEKEDV RKLLSSKHLF FKEMCTYHSG AGMQFPPDLD  120
GHQCLQSSVT AKGRDGHEAF RMTKEENEGD GEDEENEDDE DEDVEETNDE NGEDADAEGI  180
GNYSKRRKMA RNGEEVNFWT SPLSHDYGKP SASHNLNSEM MGVLQDNTKT AWERRQWMRN  240
RTMQLEEQKV NYQAQAFELE KQRFKWQEFS SKKSRELKRM KLENERMKLE NERMALQLRQ  300
KELEIEFRRS EVSINSLAHL MDKYHGREQN ELGRGPQIQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.231340.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907392.11e-104uncharacterized protein LOC112019099
TrEMBLA0A0D6R0051e-119A0A0D6R005_ARACU; Uncharacterized protein
STRINGXP_010102326.12e-99(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.16e-68sequence-specific DNA binding transcription factors