PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl016091

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 354aa MW: 41105.5 Da PI: 6.5141

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55338507	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	1.9e-08	170	214	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR +i++ f+ L +llP++ K +K ++L + +Y+++L Pgl016091 170 HMIAERNRRVKIKHYFSLLHSLLPHD-----SKKDKYSVLSNTSKYMSEL 214 7799*******************8.....6999**********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.712	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-13	166	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-6	170	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-11	170	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.59E-7	170	219	No hit	No description
SMART	SM00353	4.9E-7	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEINDAWDLE GNFNGTLVLP AIYTNTGDSG MLIQPDGQIE DSRDINAESM CIMDQLPLYS 60 TTETSWYFNS SEDMDEFDQL DHGNIFHGHS HPQAPESTTL YRQTAFGSYL RPALSLYVKT 120 GRENSMKRCF KFLKIIDENR RELQRLSHAA NIREQHEFNA PLQNKAAFLH MIAERNRRVK 180 IKHYFSLLHS LLPHDSKKDK YSVLSNTSKY MSELKHRVEE LEQTNRALAE SLRVNISKKN 240 VCTSFDQRLE EQHGTFVYSS DEVVLEQSKK IPNQVDMRIN VQIDPLSSPT SLMIVLLRRL 300 RELQLEVVSV ESTVQQFYLE AHLLITQKGD QWESSKWKNV TDVVRHTLVV NKWI

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEINDAWDLE GNFNGTLVLP AIYTNTGDSG MLIQPDGQIE DSRDINAESM CIMDQLPLYS  60
TTETSWYFNS SEDMDEFDQL DHGNIFHGHS HPQAPESTTL YRQTAFGSYL RPALSLYVKT  120
GRENSMKRCF KFLKIIDENR RELQRLSHAA NIREQHEFNA PLQNKAAFLH MIAERNRRVK  180
IKHYFSLLHS LLPHDSKKDK YSVLSNTSKY MSELKHRVEE LEQTNRALAE SLRVNISKKN  240
VCTSFDQRLE EQHGTFVYSS DEVVLEQSKK IPNQVDMRIN VQIDPLSSPT SLMIVLLRRL  300
RELQLEVVSV ESTVQQFYLE AHLLITQKGD QWESSKWKNV TDVVRHTLVV NKWI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.30469	0.0	needle

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	9e-11	bHLH family protein