PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl013897
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 182aa    MW: 20570.6 Da    PI: 6.3008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-27950PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS203.41.3e-622182183362
       GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                a++led+++++++vkpgE++aVn+vlqlhrll  ++++ s ++d vLk + sl+Pk+v+vve+ea+hn+  Fl+rf+eal+yys++fdslea     ++ 
  Pgl013897   2 ADKLEDIKPWMFQVKPGEVIAVNSVLQLHRLLYIDAPTGSsPIDVVLKSIGSLRPKIVTVVEHEANHNGLHFLDRFVEALHYYSTMFDSLEACNVLPNSI 101
                689*****************************9999888779************************************************6654455555 PP

       GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                ++ + + ++++ei+n+vaceg++r+erhetl++Wr+rl++aGF++ +l+++a  qa++ll  ++++gy+vee +gsl+lgW
  Pgl013897 102 EKLLAELYIQKEICNIVACEGRDRIERHETLSHWRMRLSRAGFSQSHLGSNAFRQASMLLTLFSGEGYTVEETNGSLTLGW 182
                56666677************************************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.9321174IPR005202Transcription factor GRAS
PfamPF035144.6E-602182IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MADKLEDIKP WMFQVKPGEV IAVNSVLQLH RLLYIDAPTG SSPIDVVLKS IGSLRPKIVT  60
VVEHEANHNG LHFLDRFVEA LHYYSTMFDS LEACNVLPNS IEKLLAELYI QKEICNIVAC  120
EGRDRIERHE TLSHWRMRLS RAGFSQSHLG SNAFRQASML LTLFSGEGYT VEETNGSLTL  180
GW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-251182195367Protein SCARECROW
5b3h_A6e-251182194366Protein SCARECROW
5b3h_D6e-251182194366Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313852.16e-81DELLA protein SLR1-like
RefseqXP_017608160.16e-81PREDICTED: DELLA protein SLR1-like
SwissprotQ84TQ73e-67GAI_GOSHI; DELLA protein GAI
TrEMBLX5CYB61e-116X5CYB6_PINTB; RGA
STRINGAquca_001_00705.11e-79(Aquilegia coerulea)
STRINGXP_009371410.11e-79(Pyrus x bretschneideri)
STRINGXP_008343960.12e-79(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.16e-65GRAS family protein