PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl013039 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||||||
Protein Properties | Length: 219aa MW: 25246.1 Da PI: 4.9545 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.5 | 4.7e-31 | 20 | 100 | 1 | 82 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrFhP deelv++yL++kv ++++++ ++i+evd++k+ePwdLp k+k +ekewyfFs rd+ky+tg+r+nrat++g+ Pgl013039 20 LPPGFRFHPMDEELVTYYLTQKVLDSSFSC-RAITEVDLNKCEPWDLPDKAKMGEKEWYFFSLRDRKYPTGTRTNRATEAGI 100 79****************************.89***************99999**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-32 | 12 | 99 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.032 | 20 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-13 | 21 | 103 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MELVNVNSKE QMNKMDDELL PPGFRFHPMD EELVTYYLTQ KVLDSSFSCR AITEVDLNKC 60 EPWDLPDKAK MGEKEWYFFS LRDRKYPTGT RTNRATEAGI HPNSYIYKTQ TDIANDRFKQ 120 CKMEPPSPLF KSSGTLKNLT VQPSSSQWIN TSSGYQHPNQ DNLEPKYGVA QQQMQNQPMV 180 SHSQETGLST EMNAEISSVV SSQRNQPYHE DAQDMDSIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-28 | 20 | 99 | 17 | 96 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-28 | 20 | 99 | 17 | 96 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-28 | 20 | 99 | 17 | 96 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-28 | 20 | 99 | 17 | 96 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-28 | 20 | 99 | 20 | 99 | NAC domain-containing protein 19 |
3swm_B | 2e-28 | 20 | 99 | 20 | 99 | NAC domain-containing protein 19 |
3swm_C | 2e-28 | 20 | 99 | 20 | 99 | NAC domain-containing protein 19 |
3swm_D | 2e-28 | 20 | 99 | 20 | 99 | NAC domain-containing protein 19 |
3swp_A | 2e-28 | 20 | 99 | 20 | 99 | NAC domain-containing protein 19 |
3swp_B | 2e-28 | 20 | 99 | 20 | 99 | NAC domain-containing protein 19 |
3swp_C | 2e-28 | 20 | 99 | 20 | 99 | NAC domain-containing protein 19 |
3swp_D | 2e-28 | 20 | 99 | 20 | 99 | NAC domain-containing protein 19 |
4dul_A | 2e-28 | 20 | 99 | 17 | 96 | NAC domain-containing protein 19 |
4dul_B | 2e-28 | 20 | 99 | 17 | 96 | NAC domain-containing protein 19 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.4031 | 0.0 | stem |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15170.1 | 1e-48 | NAC family protein |