PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl012988 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 221aa MW: 25202.4 Da PI: 7.0616 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.8 | 3.7e-15 | 30 | 59 | 22 | 51 |
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeyss 51 KKAeELS+LC+a+va+i+fsstgkl++yss Pgl012988 30 KKAEELSILCAADVALIVFSSTGKLHDYSS 59 9***************************96 PP | |||||||
2 | K-box | 60.4 | 7.2e-21 | 89 | 156 | 19 | 86 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 +++k k++ie + +++R++ G++Le Lsl++LqqLe+qL +l+ +R +K+e+++++i+elq k +e Pgl012988 89 PDMKKRKQQIEDISQTLRNMHGKELEGLSLNDLQQLEEQLTMGLNCVRLQKDEYMIKEINELQDKIRE 156 578899***********************************************************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-12 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.965 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.5E-17 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-11 | 30 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.339 | 84 | 182 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.2E-16 | 90 | 156 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAREKIELKR IAKLRPGRSR SRRGERGRSK KAEELSILCA ADVALIVFSS TGKLHDYSSS 60 SMKMILDHYN LYSSTIQKDG PPNPELESPD MKKRKQQIED ISQTLRNMHG KELEGLSLND 120 LQQLEEQLTM GLNCVRLQKD EYMIKEINEL QDKIREGYGL HLENNDADES FFIGQSENKD 180 PQSSASVTTS AFNFRLHKSP NKYYEDSDTS LQLGLSSQSK I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 95 | PDMKKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.24543 | 0.0 | needle| vegetative bud |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | C0PSG6 | 1e-138 | C0PSG6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-36 | MIKC_MADS family protein |