PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl012689 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 27417.2 Da PI: 4.8744 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.8 | 2.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri n s rqvtfskRr g++KKA+ELS+LC+a+va+++fsstgkly+yss Pgl012689 9 KRIANASARQVTFSKRRRGLFKKAQELSILCEADVALLVFSSTGKLYDYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 29.9 | 2.4e-11 | 102 | 153 | 36 | 87 |
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 + l e+Le L+lk+L++Le+q e l+ iRs+K e+l+++i+elq+k +++ Pgl012689 102 SQDLREELEGLTLKDLEKLEEQFEMELSYIRSQKVEHLVKKINELQQKFESQ 153 555669*****************************************98765 PP | |||||||
3 | K-box | 39.4 | 2.5e-14 | 158 | 230 | 24 | 100 |
K-box 24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +k++ e + l e+Le L+lk+L++Le+q e l+ iRs+K e+l+++i+elq+k ++ een++Lr +l+e Pgl012689 158 IKQQFEDASQD----LREELEGLTLKDLEKLEEQFEMELSCIRSQKVEHLVKKINELQQKVIQMIEENTKLRGQLNE 230 55555554444....449******************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.422 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.44E-34 | 2 | 69 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-29 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.6E-7 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.9 | 129 | 234 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.1E-10 | 148 | 228 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAREKIKIKR IANASARQVT FSKRRRGLFK KAQELSILCE ADVALLVFSS TGKLYDYSSS 60 SVEVILDKYV LYPSTIQKDG QQILEFESQD PKRIIQQFED ASQDLREELE GLTLKDLEKL 120 EEQFEMELSY IRSQKVEHLV KKINELQQKF ESQDPKRIKQ QFEDASQDLR EELEGLTLKD 180 LEKLEEQFEM ELSCIRSQKV EHLVKKINEL QQKVIQMIEE NTKLRGQLNE GDGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_B | 2e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_C | 2e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_D | 2e-19 | 1 | 72 | 1 | 72 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.5677 | 0.0 | needle| stem| vegetative bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023906595.1 | 1e-43 | MADS-box protein JOINTLESS | ||||
Refseq | XP_023906601.1 | 1e-43 | MADS-box protein JOINTLESS | ||||
Refseq | XP_023906610.1 | 1e-43 | MADS-box protein JOINTLESS | ||||
Refseq | XP_023906617.1 | 1e-43 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 5e-42 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A9NR51 | 1e-94 | A9NR51_PICSI; Uncharacterized protein | ||||
TrEMBL | B8LN41 | 2e-94 | B8LN41_PICSI; Uncharacterized protein | ||||
STRING | VIT_00s0313g00070.t01 | 4e-42 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-43 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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