PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl011359

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C3H

Protein Properties

Length: 291aa MW: 32167.9 Da PI: 7.5843

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S29748220	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-43750	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	83	104	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C fa+ G C++G++C+ Hg Pgl011359 83 PICA-FAAAGKCPRGETCPQLHG 104 5677.*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.929	79	106	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.12	81	105	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	1.3E-9	130	207	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	1.67E-10	137	212	No hit	No description
CDD	cd00162	4.42E-4	147	207	No hit	No description
PROSITE profile	PS50089	12.165	148	206	IPR001841	Zinc finger, RING-type
SMART	SM00184	1.1E-6	148	205	IPR001841	Zinc finger, RING-type
Pfam	PF00097	5.7E-7	148	205	IPR018957	Zinc finger, C3HC4 RING-type
PROSITE pattern	PS00518	0	172	181	IPR017907	Zinc finger, RING-type, conserved site
SMART	SM00356	15	237	263	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.427	245	264	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
XFSLSPRSQL GSEVEHKSAA VHDGVTVGNN TSVAWHTGEL SGLSKPFFPP LGQVWTTGSQ 60 DVSSTSRMEL EGESSFSNAA DFPICAFAAA GKCPRGETCP QLHGDLCATC GKHCLHPYRL 120 AEREEHIKQC QRSQKRLEAL RSSQEIECSV CLDRVLSKPT AAERKFGLMS ECDHPFCISC 180 IRNWRGNNPV PGMDVNSVLR ACPVCRKLSH FVIPSVIWYS NPEEKEEIID NYKKKLSSID 240 ADTFDFGKGT CPFGTSCFYK HAYKDGRREE VKLRHLGAAD GSTVIAKDVR X

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.27725	0.0	root\| somatic embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in dry seeds. Increased expression throughout imbibition and germination and when radicle and shoots are emerging. Up-regulated during cell differentiation. {ECO:0000269\|PubMed:17870591}.
Uniprot	TISSUE SPECIFICITY: Expressed in primary roots and leaves. Detected in vascular bundle tissues. {ECO:0000269\|PubMed:17870591}.

Functional Description ? help Back to Top
Source	Description
UniProt	E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011625473.1	1e-131	E3 ubiquitin-protein ligase makorin
Refseq	XP_011625474.1	1e-131	E3 ubiquitin-protein ligase makorin
Swissprot	Q5ZA07	1e-121	C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBL	A0A0D6R3J6	1e-160	A0A0D6R3J6_ARACU; Uncharacterized protein
STRING	Aquca_014_00814.1	1e-133	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	1e-108	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sahi VP, et al. A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo. Plant Signal Behav, 2012. 7(3): p. 375-81 [PMID:22499205] Wadekar HB,Sahi VP,Morita EH,Abe S MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare). Planta, 2013. 237(4): p. 1083-95 [PMID:23262670]