PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl010503

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 336aa MW: 36827.1 Da PI: 8.3819

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55349647	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-13722	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.5e-33	167	224	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt +C+vkk+vers+edp +v++tYeg+H h+ Pgl010503 167 EDGYRWRKYGQKAVKNSPYPRSYYRCTNGKCSVKKRVERSSEDPGIVITTYEGQHSHP 224 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.5E-35	151	226	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-29	158	226	IPR003657	WRKY domain
PROSITE profile	PS50811	31.766	161	226	IPR003657	WRKY domain
SMART	SM00774	2.7E-38	166	225	IPR003657	WRKY domain
Pfam	PF03106	3.8E-26	167	224	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
LQAGLKMGEA DYSALSKSLA CGELGDQQQQ QSEFLEYDQE VKVQPSHSNC NSQNPSAIQL 60 RPFIAEAQVG GRSGDTSTVP GTPNSSMSSS SSEGHELEQS SLVAPSVTTS STAAKGQGPA 120 DPESQTDLIA AEKPSMESKK PPRKKGQKRN REPRFAFMTK SDVDHLEDGY RWRKYGQKAV 180 KNSPYPRSYY RCTNGKCSVK KRVERSSEDP GIVITTYEGQ HSHPSPAILR GSAESQSHFS 240 DQRLNSPFTQ TPLIRFPPHP MIMNSTNQVP AASPSCTNNL HHLGTIKSCM NPHLLPQSHH 300 GPQPHQAHLM PTNLSQQPLI DHGLLEDIVP PGMRKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-27	156	227	7	78	Probable WRKY transcription factor 4
2lex_A	8e-27	156	227	7	78	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.22571	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014492940.1	2e-55	probable WRKY transcription factor 57
Refseq	XP_014492941.1	2e-55	probable WRKY transcription factor 57
TrEMBL	A0A0D6QVU5	8e-97	A0A0D6QVU5_ARACU; Uncharacterized protein
STRING	XP_007157586.1	2e-54	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	1e-49	WRKY DNA-binding protein 57