PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010345
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 349aa    MW: 38975.7 Da    PI: 5.7761
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336669PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-38354PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.29.8e-37271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++l+++isw+e+g++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++i+
     Pgl010345  27 FLMKTYRLVDDPSLDDIISWNEDGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRRGEKKLLCEIH 114
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
     Pgl010345 115 RRKN 118
                   **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3818111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3524116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.0E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAQSVEQPND ATVPRPADSH RSIPTPFLMK TYRLVDDPSL DDIISWNEDG TTFIVWRPAE  60
FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VPDRWEFANE FFRRGEKKLL CEIHRRKNPQ  120
ANGATANMPE SPSITGEDQQ GCSSALLPLS SPAEAGGLLD ENERLKQQNL FLMSEVAQIK  180
SLCSDILAFM SKHANISPES LRKSLDLNNV PDSFQQGAPI DGSPDQSKDS CQRTQLCSSV  240
HLSENETANS CGNSKEMTDG KCVDSVKVED NDNSGSPKLF GVPLFSKKRS RPCSPDNDEK  300
PEVNGNLFCV GNDAALKCVK AEPGLEMELR QKQAPWLKFR SARNEKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-212711629129Heat shock factor protein 1
5d5v_B1e-212711629129Heat shock factor protein 1
5d5v_D1e-212711629129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.33330.0stem| vegetative bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6Z9C85e-68HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A0D6R6B31e-116A0A0D6R6B3_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-67heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]