PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010260
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 355aa    MW: 39233.1 Da    PI: 4.7627
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55347627PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-12434PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind64.23.1e-2015341102
                   HHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  41 LpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++i+r+k 
     Pgl010260   1 LPKYFKHNNFSSFVRQLNTYGFRKVDPDQ---------WEFANEDFLRGQRNLLKNIHRRKP 53 
                   89************************999.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-19151IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE patternPS004340125IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-16151IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.9E-15151IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-16151IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
LPKYFKHNNF SSFVRQLNTY GFRKVDPDQW EFANEDFLRG QRNLLKNIHR RKPMHSHSQN  60
PQGQGVCNDA LKYELEEEIQ RLKXANKKRR LPKQENCPEA GETELTDTQI VKYQPASGDE  120
CSAVPMKVLN KDPFNRMESS LNSLETFFQD VSQACGEVMD SGSSSQACLT EMHGTCFPNI  180
CISPGISDIQ GSCALSEIHS SSHASPQLAE SVSCEIPCQM SLGLSLSQCE TTKGAETLNQ  240
SGKDEKESYT GSKTSGIDVN SEPVAMEVGD NERAVGKVTA SGKVTSGVND LFWEQFLTET  300
PGSATDTQEA ESKIQESRTK DQDESLPENG KCWSNRKTLD QLTEQMGQLA SGTQT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.125050.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-43heat shock transcription factor A4A