PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl009314

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TCP

Protein Properties

Length: 476aa MW: 49143.1 Da PI: 10.0532

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55334164	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-15909	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121	1.4e-37	93	192	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg........k 89 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+qa+pai+e+tgt++ +a ++ + ss+ s+ +ss++ + Pgl009314 93 PPKRSSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPAIIEATGTGTVPALAMsmgnSVRSSVPSTTASSATirplaiglR 192 689*************************************************************999995443222222222222222222545444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-32	98	198	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.016	99	153	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MESGGHGNGE EQQQQGTHLS VGSFAQTTVT MGGASGIGPP ANSPSSASAQ NTDENKSSAL 60 ISGISQSVEV KQEVQREGEL KDQQQSVAVK KTPPKRSSTK DRHTKVEGRG RRIRMPATCA 120 ARIFQLTREL GHKSDGETIR WLLEQAEPAI IEATGTGTVP ALAMSMGNSV RSSVPSTTAS 180 SATIRPLAIG LRAKTEWDES EDKKNVLDRT RKITAGPDAS GGSRIVQDGQ TVGGGSVKKR 240 ARGLTVKKEH DPLTASASIN AVPAKPAPTA RQTPLQPPPQ AQVAPLSQNT TPPQASGLMS 300 MWAVTPDRGG SMPGAFWMLP VTGSSASAPG IVGGGPSNQQ IWTFPSGSVG PMYSMAAAAA 360 AAAAPPGSTN PSSMTNPGVM PLTSVLPSGM IMPRLNLPGG MGLEFPGGNL RHMPLTSMLL 420 QDTSQAGTGL GLGAEGHLGM LAALSAYNKN TKSEHQFMGS SHQQQGESGD DPANSQ

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MESGGHGNGE EQQQQGTHLS VGSFAQTTVT MGGASGIGPP ANSPSSASAQ NTDENKSSAL  60
ISGISQSVEV KQEVQREGEL KDQQQSVAVK KTPPKRSSTK DRHTKVEGRG RRIRMPATCA  120
ARIFQLTREL GHKSDGETIR WLLEQAEPAI IEATGTGTVP ALAMSMGNSV RSSVPSTTAS  180
SATIRPLAIG LRAKTEWDES EDKKNVLDRT RKITAGPDAS GGSRIVQDGQ TVGGGSVKKR  240
ARGLTVKKEH DPLTASASIN AVPAKPAPTA RQTPLQPPPQ AQVAPLSQNT TPPQASGLMS  300
MWAVTPDRGG SMPGAFWMLP VTGSSASAPG IVGGGPSNQQ IWTFPSGSVG PMYSMAAAAA  360
AAAAPPGSTN PSSMTNPGVM PLTSVLPSGM IMPRLNLPGG MGLEFPGGNL RHMPLTSMLL  420
QDTSQAGTGL GLGAEGHLGM LAALSAYNKN TKSEHQFMGS SHQQQGESGD DPANSQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.20694	0.0	somatic embryo\| vegetative bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024386490.1	1e-78	transcription factor TCP22-like
Refseq	XP_024386491.1	1e-78	transcription factor TCP22-like
Refseq	XP_024386492.1	1e-78	transcription factor TCP22-like
TrEMBL	A0A0C9QTA8	1e-179	A0A0C9QTA8_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10759_2066 transcribed RNA sequence
STRING	PP1S67_183V6.1	4e-78	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	4e-41	TCP family protein