PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pgl009169 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||||||
Family | WRKY | ||||||||||||
Protein Properties | Length: 509aa MW: 56309.2 Da PI: 4.9886 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.6 | 2.1e-27 | 223 | 283 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK++ g+++prsYYrCt++ gC+++kkv+r +++p+v+e+tY+g H ++ Pgl009169 223 EDGYTWRKYGQKDILGAQHPRSYYRCTHKhdlGCQATKKVQRPDDNPSVFEVTYSGVHSCQ 283 7***************************99999*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-26 | 220 | 283 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-24 | 221 | 283 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-38 | 222 | 284 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.702 | 223 | 285 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-26 | 223 | 283 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 509 aa Download sequence Send to blast |
XEPQLPTLEN VEDEFPEFTV SEIPNLFQQE LGLTDRMAES MDVRDLDECL KEVNHGCQMA 60 RGLETKLNSA KGPDLYELLW ASSAEIVTTF SHAMEMLGSN SSPNCLDNWQ EELKVLLEKQ 120 LGGLAVGHSP KKSVKDNRDS SPRSGGRSSL SGSPPSDMSE GSPVRSLATP GKLKRNDPTD 180 TSENERASSK ERRGISRKRK SLPKWTRIMP ANSSEPGNDI PPEDGYTWRK YGQKDILGAQ 240 HPRSYYRCTH KHDLGCQATK KVQRPDDNPS VFEVTYSGVH SCQSDGRLLQ LPFPISQIQG 300 SNTIPNSRTP TTLVFGTDSN LQSNTSSTGN IAIFPPTHFL SSSSTPWFAA HDGSVCPVKS 360 ESLDSFGKSP SYSPNMDSSA HSAMPFTSPA GDQIYRLQGS EKEISADFIP HHQQNEYPST 420 FLGGELEFPS FAPFFCSPST SESNYMPPPT PLMQSMDIRQ RLQASESDIT EVVSTHNSAT 480 DSPMLEMDHF PTMFTMVNLD SIFERNENF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-20 | 223 | 283 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 195 | 200 | SRKRKS |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pgl.3916 | 0.0 | root| stem| vegetative bud |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9S9Q1 | 1e-108 | A0A0C9S9Q1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_7171_2278 transcribed RNA sequence |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11070.2 | 2e-30 | WRKY family protein |