PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009169
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 509aa    MW: 56309.2 Da    PI: 4.9886
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335948PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-6622PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.62.1e-27223283259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK++ g+++prsYYrCt++   gC+++kkv+r +++p+v+e+tY+g H ++
  Pgl009169 223 EDGYTWRKYGQKDILGAQHPRSYYRCTHKhdlGCQATKKVQRPDDNPSVFEVTYSGVHSCQ 283
                7***************************99999*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-26220283IPR003657WRKY domain
SuperFamilySSF1182902.88E-24221283IPR003657WRKY domain
SMARTSM007748.3E-38222284IPR003657WRKY domain
PROSITE profilePS5081120.702223285IPR003657WRKY domain
PfamPF031062.1E-26223283IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
XEPQLPTLEN VEDEFPEFTV SEIPNLFQQE LGLTDRMAES MDVRDLDECL KEVNHGCQMA  60
RGLETKLNSA KGPDLYELLW ASSAEIVTTF SHAMEMLGSN SSPNCLDNWQ EELKVLLEKQ  120
LGGLAVGHSP KKSVKDNRDS SPRSGGRSSL SGSPPSDMSE GSPVRSLATP GKLKRNDPTD  180
TSENERASSK ERRGISRKRK SLPKWTRIMP ANSSEPGNDI PPEDGYTWRK YGQKDILGAQ  240
HPRSYYRCTH KHDLGCQATK KVQRPDDNPS VFEVTYSGVH SCQSDGRLLQ LPFPISQIQG  300
SNTIPNSRTP TTLVFGTDSN LQSNTSSTGN IAIFPPTHFL SSSSTPWFAA HDGSVCPVKS  360
ESLDSFGKSP SYSPNMDSSA HSAMPFTSPA GDQIYRLQGS EKEISADFIP HHQQNEYPST  420
FLGGELEFPS FAPFFCSPST SESNYMPPPT PLMQSMDIRQ RLQASESDIT EVVSTHNSAT  480
DSPMLEMDHF PTMFTMVNLD SIFERNENF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20223283969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200SRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.39160.0root| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S9Q11e-108A0A0C9S9Q1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_7171_2278 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-30WRKY family protein