PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009106
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 524aa    MW: 57527.5 Da    PI: 6.8941
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336352PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-11941PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.7e-09204224526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C++f++ GtC++Gd C FaHg
  Pgl009106 204 ACPDFRK-GTCRRGDACEFAHG 224
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.69E-5198228IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6199225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929200226IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7204224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5204226IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484234258IPR000571Zinc finger, CCCH-type
SMARTSM0035614234257IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSSVSAEFSM GPLPWSFFSD HSSDNHGNDS VYFMSPGRSG GLNLNEPQFS SSPNSDYMNS  60
SPSSRFAGGR GFEEDRGALS IPDFSDMSFG YDAGQSNGDF LPYKDGRGEM GVCINNAFVG  120
SAASSPRLED VICALQKYLP SNNEDEESLP AVDAYSCDEF RMYEFKVRRC MRGRSHDWTE  180
CPFAHPGEKA RRRDPRRFHY SGTACPDFRK GTCRRGDACE FAHGVFECWL HPARYRTQPC  240
KDGRSCKRRV CFFAHTPQQL RLLPGLSSPS SNSRSSASLH VASALKNFSL SASAAAYDGS  300
PLRHALEGXR EFESPGRISD VFPDFDIGGA FSVPSASVST AVTICVSASS PEAGWSNTYR  360
VGLQKAVLNR QLPGHRRHVE RIPSMPSESS RGLSSPRLMT LSDTNSQQPM AELMNSLQGL  420
RLKESSVPSW LQAQAQMVNG GGGHGSPRVS NLRHCVVQSL PCTPTHSENT DDAGDWFEEP  480
VQRVESGKDL RAKIYARLTR ENVLQDSSSS VESPDVGWVN ELVK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.227320.0needle| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376481.11e-103zinc finger CCCH domain-containing protein 30-like
RefseqXP_024376584.11e-103zinc finger CCCH domain-containing protein 30-like
TrEMBLA0A2K1KJM21e-101A0A2K1KJM2_PHYPA; Uncharacterized protein
STRINGPP1S297_45V6.11e-102(Physcomitrella patens)
STRINGPP1S297_51V6.11e-102(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.17e-74C3H family protein