PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl009057
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 537aa    MW: 59643.5 Da    PI: 7.6373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337151PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-18393PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07200219626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C++f++ G C++Gd C +aHg
  Pgl009057 200 CPDFRK-GSCRRGDACEYAHG 219
                9*****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.7E-4194220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.667195221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4200221IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5200219IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.085229253IPR000571Zinc finger, CCCH-type
SMARTSM0035611229252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MPGVSAEQHF FTGSPSSVFG NRCCPVSRAF ESQDLPKSFY AEPPELSPHS LTNMEYLQSL  60
NLFSETSPNS EKSTYSKDSA SAQKLFNKSL SFGSNGLGVD FGFNTTVMES ENFLVSPRTV  120
IESPDGISSL HKFLPSNNEE EASWPAVDAY SCDEFRMYEF KVRRCMRGRS HDWTECPFAH  180
PGEKARRRDP RRFHYSGTGC PDFRKGSCRR GDACEYAHGV FECWLHPARY RTQPCKDGRN  240
CRRRVCFFAH TPEQLRLLPG ASQAQSHATT NFGNRNSFPM RNAVSGSYDG SPLRYAVSAA  300
ASLDGAFGYD GFDGNASPRG HLNYLCKAKA KAKASQISSP TSTLIGHSYS PPPLSPPLSP  360
SASPPISPDS CLDSHVNYAN SPIKSYLNSD TNTAPGSFTP RRHLEKLISI PPPNLDPSPL  420
SPAEHSVAPS SKLIIDGLIS SLQRMEINRE TTPWFQQQQQ LNLPRRSCLS LPCAPRWDDD  480
AWEIEATEDG SIQRVESGKH LRAKIYGRLT RESTLQDKNN INTEYSPDLG WVNELVM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.117840.0needle| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376584.11e-115zinc finger CCCH domain-containing protein 30-like
TrEMBLB8LMK41e-126B8LMK4_PICSI; Uncharacterized protein
STRINGPP1S297_45V6.11e-114(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-77C3H family protein