PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl008883

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C3H

Protein Properties

Length: 629aa MW: 68691.7 Da PI: 8.1272

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-19767	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1e-08	249	269	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C++Gd C FaHg Pgl008883 249 ACPDFRK-GSCRRGDACEFAHG 269 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	6.3E-6	244	270	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.807	245	271	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.1E-7	249	269	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-5	249	271	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	11	279	302	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.085	279	303	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MAQFLSFSAF LNAERFYRYY XLNCFKIRTP NLKQRRIVGF VKSLVSLKMP GVSSEECQAL 60 SLDSFMPGAS FFSDSNGYPN AVIGNGDFVS GIEFQGSELL MDQSQPGTEG FNFSNNETRC 120 LFSKSLSFGS SPSSYRSDDF HHDSFAGSWS EAVKDEAFLS VPMSSSTHVG AMGGSSLAAL 180 HKYLPSNNED EASWPAVDAY SCDEFRMYEF KVRRCMRGRS HDWTECPFAH PGEKARRRDP 240 RRFHYSGTAC PDFRKGSCRR GDACEFAHGV FECWLHPARY RTQPCKDGRN CRRRVCFFAH 300 TPEQLRLLPG ASVGSRNGFQ SKNHEGSNLR HAVSFDGALA VAAYDGGGSS PVNHFGNGGG 360 YFDGSQTGGS SPRGYLCGKS NLSCTSQFQM SSPTSTLVGH AHSPPPLSPP LSPSGSPRES 420 SPNWTYGVPN SSPVAAANKP LHHKSFSFVN MDASSVSASP VVHPSFGLQS PRRHHSITIP 480 PTHDSRGLSS PVSSLSNDGS SQSPSNAVSD LIGSLQSLDL NGGGSSTATV PSGPSQWLQA 540 EASYAALHRS CSPRASNLRH CSYSLPSTPT KSRWEKNWES DFFAQEEPLQ RVESGRELRA 600 KIYSRLSREN PDNINAESPD LGWVNELVK

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MAQFLSFSAF LNAERFYRYY XLNCFKIRTP NLKQRRIVGF VKSLVSLKMP GVSSEECQAL  60
SLDSFMPGAS FFSDSNGYPN AVIGNGDFVS GIEFQGSELL MDQSQPGTEG FNFSNNETRC  120
LFSKSLSFGS SPSSYRSDDF HHDSFAGSWS EAVKDEAFLS VPMSSSTHVG AMGGSSLAAL  180
HKYLPSNNED EASWPAVDAY SCDEFRMYEF KVRRCMRGRS HDWTECPFAH PGEKARRRDP  240
RRFHYSGTAC PDFRKGSCRR GDACEFAHGV FECWLHPARY RTQPCKDGRN CRRRVCFFAH  300
TPEQLRLLPG ASVGSRNGFQ SKNHEGSNLR HAVSFDGALA VAAYDGGGSS PVNHFGNGGG  360
YFDGSQTGGS SPRGYLCGKS NLSCTSQFQM SSPTSTLVGH AHSPPPLSPP LSPSGSPRES  420
SPNWTYGVPN SSPVAAANKP LHHKSFSFVN MDASSVSASP VVHPSFGLQS PRRHHSITIP  480
PTHDSRGLSS PVSSLSNDGS SQSPSNAVSD LIGSLQSLDL NGGGSSTATV PSGPSQWLQA  540
EASYAALHRS CSPRASNLRH CSYSLPSTPT KSRWEKNWES DFFAQEEPLQ RVESGRELRA  600
KIYSRLSREN PDNINAESPD LGWVNELVK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.5322	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376481.1	1e-115	zinc finger CCCH domain-containing protein 30-like
Refseq	XP_024376584.1	1e-115	zinc finger CCCH domain-containing protein 30-like
TrEMBL	B8LMK4	0.0	B8LMK4_PICSI; Uncharacterized protein
STRING	PP1S297_45V6.1	1e-114	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-77	C3H family protein