PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl008816
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 755aa    MW: 81631.8 Da    PI: 6.7138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55347979PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-40588PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.7e-07301321526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f++ GtC++ d C +aHg
  Pgl008816 301 PCPDFRK-GTCRRSDVCEYAHG 321
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0024846001444IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.2E-1516170IPR020683Ankyrin repeat-containing domain
CDDcd002049.46E-1416142No hitNo description
SuperFamilySSF484035.13E-1521141IPR020683Ankyrin repeat-containing domain
PfamPF127965.0E-857131IPR020683Ankyrin repeat-containing domain
SMARTSM002481.26190IPR002110Ankyrin repeat
PROSITE profilePS5029716.06961139IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002199131IPR002110Ankyrin repeat
PROSITE profilePS5008810.36699134IPR002110Ankyrin repeat
SMARTSM003561.1E-4296322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.601301323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4329359IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.042331355IPR000571Zinc finger, CCCH-type
SMARTSM0035630331354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MAENQAIKVK EISESCSSLH ELAANNDLIG FKKAMEEEGS KIDEVSFWYG RQNGSNQMVL  60
EQRTPLMVAS LYGSVDALKY ILSIYVTCGA DVNQACGSDN CTALHCAAVG GSACAVETVK  120
LLLQSGGDVN CLDAYGRRPA DVIMVSPKLT EVKVKLEEML NAAGTGQTSP TKVANIIPGL  180
PGLESKGMES MPSSTLLPLS VSLEASNNRS GCVHSPTSSP KSMEALKGFG DVNEKKEYPV  240
DPSFPDIKNS IYTTDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRRYHYSCV  300
PCPDFRKGTC RRSDVCEYAH GVFECWLHPA QYRTRLCKDG TNCSRRVCFF AHTSEELRPL  360
IVSTGSAVPS PRASSSLDMS SVMSPLAPGS PSSVSMMSPF LSNPQQGSVL TPPMSPSASS  420
VNGYGGWPQP NVPTLHLPGS SVQASRLRAE LNARDMPVED SPRISDYEGQ LLNDFSPLST  480
QARMNAAAAV ISGGGNTTTR SGKYKSHGIN TVAPTNLEDL FASEVTSPRV AVHEPSIFSQ  540
MSPQMQAHKT AHAYIQIQNQ MLPAINTQAF SQGITQMQQA AIEPQSPGHS LMQSPFQSSS  600
YGLGSPGRMS PRCVDVERHN TCGSPLSPAM AATLNSRIAA FVQRDKRSHS SRDLGANVTP  660
NSWSDWGSPT GKVDWGVQGE ELSKLRKSAS FGPRSYEEPD LSWVQTLVKE TTPDGKDGGN  720
VGCSGETPHK GQIENVDHSV LGAWIEQMQL DQIVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.55590.0needle| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267839.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLC0PPY90.0C0PPY9_PICSI; Uncharacterized protein
STRINGXP_006421436.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]