PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl007932 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||||||
Protein Properties | Length: 166aa MW: 18144.2 Da PI: 4.2605 | ||||||||||||
Description | LBD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.5 | 3e-26 | 34 | 124 | 9 | 99 |
DUF260 9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +++C ++C+l f++++ +kfa+++++FGa nv++l+++lp ++r +a++s+vyeA ar++dP G++g+i++lq+ql+ l++++ ++++ Pgl007932 34 QNECLENCTLLYQFASNDLHKFAILQQVFGACNVVQLVQDLPSDQRVEAIDSMVYEASARLEDPAFGCTGIIHQLQRQLSDLHSQITTTQA 124 569**********************************************************************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.398 | 25 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-24 | 34 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MGGDMDGSKI QKQKECLEKP SIGADADDSK LEKQNECLEN CTLLYQFASN DLHKFAILQQ 60 VFGACNVVQL VQDLPSDQRV EAIDSMVYEA SARLEDPAFG CTGIIHQLQR QLSDLHSQIT 120 TTQATIQKVR SQQAALLASV AGFNTAGEDV DKFDPTSSAS PKDYDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-21 | 20 | 119 | 6 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-21 | 20 | 119 | 6 | 104 | LOB family transfactor Ramosa2.1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.3870 | 0.0 | cone| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P1U3 | 5e-57 | A9P1U3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 5e-30 | LOB domain-containing protein 11 |