PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pgl007150 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||||||
Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 210aa MW: 24247.9 Da PI: 8.7304 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.1 | 2.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i++ + rqvtfskR++gi+KKA+ELSvLCdaevav+ifs+tg+lyey+s Pgl007150 9 KKIDDVTSRQVTFSKRKAGIFKKAHELSVLCDAEVAVLIFSNTGRLYEYAS 59 689**********************************************86 PP | |||||||
2 | K-box | 61.3 | 3.8e-21 | 86 | 173 | 11 | 98 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + q+ ++ L+++++ Lqr qR+++Ge+L L++ eL+ Le+ +e ++ k+R+++n++ le+i +l+ ke+ l en++L+k+l Pgl007150 86 VENKNPIQEGIEILRQKLRALQRLQRNMMGEELALLKVGELHDLEHTIECAILKVRARQNQIQLEKIANLRFKEQLLIGENEQLQKML 173 45556789999**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.085 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.09E-42 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-31 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.5E-17 | 88 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.489 | 89 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRGKIEIKK IDDVTSRQVT FSKRKAGIFK KAHELSVLCD AEVAVLIFSN TGRLYEYASS 60 RCMERTIERY EKCTKAINCP SSEHNVENKN PIQEGIEILR QKLRALQRLQ RNMMGEELAL 120 LKVGELHDLE HTIECAILKV RARQNQIQLE KIANLRFKEQ LLIGENEQLQ KMLLEEAQRS 180 LGLRPTSLIQ TDIITSPTVI MNPYEGFFXW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 9e-20 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-20 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-20 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-20 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 9e-20 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-20 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-20 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-20 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-20 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-20 | 1 | 70 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pgl.7789 | 0.0 | stem |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373424.1 | 9e-49 | MADS-box protein GGM13-like isoform X1 | ||||
Refseq | XP_024373432.1 | 8e-49 | MADS-box protein GGM13-like isoform X2 | ||||
TrEMBL | S5MKE4 | 1e-150 | S5MKE4_PICAB; DAL21 protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-42 | AGAMOUS-like 8 |