PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl006620 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 233aa MW: 26816.4 Da PI: 6.5145 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.8 | 9.3e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i n ++rq tfskRrng++KKA+ELSvLCda+v +i++ + gkl+e+ss Pgl006620 9 KKIMNATRRQATFSKRRNGLFKKANELSVLCDADVGLIVYNTAGKLFEFSS 59 6899*********************************************96 PP | |||||||
2 | K-box | 41.6 | 5.3e-15 | 95 | 178 | 14 | 100 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 a + e++kLk+ i+nL r G+++e +slk + Leq Le ++k + s++ e++++q++ lq++e+++ +e +Lr+++ee Pgl006620 95 ACDDEMEVEKLKEDINNLSRF---CRGDEVEGISLKMFEDLEQTLEMAVKCVQSRQREIFTKQVNILQNQEDKALKERGELRNQIEE 178 556688************987...88**********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.427 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.19E-34 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 9.03E-29 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.873 | 88 | 182 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.2E-11 | 99 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGRVKREIKK IMNATRRQAT FSKRRNGLFK KANELSVLCD ADVGLIVYNT AGKLFEFSSS 60 SSMKMLINKY LKHRDCGESN FSCGGESNFS CQMHACDDEM EVEKLKEDIN NLSRFCRGDE 120 VEGISLKMFE DLEQTLEMAV KCVQSRQREI FTKQVNILQN QEDKALKERG ELRNQIEEIY 180 RHTTPTRYCA LVDIQGEYGE NLNSEGTSSS KNIHSKYGNE VLDDFETFLT LRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-17 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_B | 2e-17 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_C | 2e-17 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_D | 2e-17 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K0M7B0 | 1e-127 | A0A0K0M7B0_PINTB; MADS3 (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 3e-36 | MIKC_MADS family protein |