PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pgl006610 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||||||
Family | ZF-HD | ||||||||||||
Protein Properties | Length: 233aa MW: 25005.9 Da PI: 9.367 | ||||||||||||
Description | ZF-HD family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.1 | 7.7e-32 | 26 | 81 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eC+kNhAa++G+ha+DGCgEfm+s g egta+alkC ACgCHRnFHR+eve Pgl006610 26 IVRYRECQKNHAANIGSHALDGCGEFMAS-GLEGTADALKCQACGCHRNFHRQEVEG 81 689*************************9.999********************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.1E-29 | 27 | 79 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-19 | 27 | 77 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-28 | 28 | 79 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.749 | 29 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.37E-18 | 161 | 231 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-31 | 162 | 232 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.3E-25 | 170 | 227 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
XGQNGNGDEV KPLVEKSKKA ESVEKIVRYR ECQKNHAANI GSHALDGCGE FMASGLEGTA 60 DALKCQACGC HRNFHRQEVE GEGGSGTSSL QDGWYLGAAG RSRLDKKRPL PGGGGVGVPL 120 FSSPSPPPTA VHASGPQMLM ALSSACTLGD PDLHEGLGGR GVGSSSSAMK KRFRTKFSQE 180 QKEKMHAFAD QLGWRIQKHD EAAVHQFCNE AGVRRHVLKV WMHNNKNTLG KKS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-28 | 171 | 228 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pgl.11865 | 0.0 | somatic embryo |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402412.1 | 8e-69 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q9SB61 | 9e-59 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | B8LM96 | 1e-170 | B8LM96_PICSI; Uncharacterized protein | ||||
STRING | PP1S3_539V6.1 | 3e-68 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69600.1 | 7e-45 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|