PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl006590 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 234aa MW: 26914.3 Da PI: 6.1769 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.5 | 1.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri n s rqvtfskRr g++KKA+ELS+LC+a+va+++fsstgkly+yss Pgl006590 9 KRIANASARQVTFSKRRRGLFKKAQELSILCEADVALVVFSSTGKLYDYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 75 | 2e-25 | 79 | 170 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + e +++l+++k++ie + +++R++ Ge+Le+Lslk+LqqLe+qLe +l+k+Rs+K e +l++i+elq+k ++ een +Lr++++e Pgl006590 79 DGQPNLEIESHDLKRIKQQIEDISQTLRNIHGEELEKLSLKDLQQLEEQLEAGLSKVRSQKGENILKEINELQQKGIRIIEENSKLRREIKE 170 55667788899******************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.815 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.01E-36 | 2 | 69 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-31 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.33 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.7E-20 | 87 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAREKIEIKR IANASARQVT FSKRRRGLFK KAQELSILCE ADVALVVFSS TGKLYDYSSS 60 SMKMMLDKYI LYPSSNRKDG QPNLEIESHD LKRIKQQIED ISQTLRNIHG EELEKLSLKD 120 LQQLEEQLEA GLSKVRSQKG ENILKEINEL QQKGIRIIEE NSKLRREIKE AERGHVENND 180 TEESFFIEPS ENQDPQSSES ITNAFTFKLH KSAIKDYEDS DTSLQLGLSS QSKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-20 | 1 | 79 | 1 | 81 | MEF2C |
5f28_B | 4e-20 | 1 | 79 | 1 | 81 | MEF2C |
5f28_C | 4e-20 | 1 | 79 | 1 | 81 | MEF2C |
5f28_D | 4e-20 | 1 | 79 | 1 | 81 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.6460 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075278.1 | 6e-71 | MADS-box protein SVP-like | ||||
Swissprot | Q9FUY6 | 2e-66 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | B8LNJ6 | 1e-167 | B8LNJ6_PICSI; Uncharacterized protein | ||||
STRING | VIT_00s0313g00070.t01 | 1e-69 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-55 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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