PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl006542 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 236aa MW: 27085.6 Da PI: 7.1478 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.7 | 2.3e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 r n+s rqvtfskRr g++KKA ELS+LC+a+va+++fsstgkly+yss Pgl006542 10 RRANTSTRQVTFSKRRRGLFKKARELSILCEADVALVVFSSTGKLYDYSS 59 56799*******************************************96 PP | |||||||
2 | K-box | 65.7 | 1.6e-22 | 81 | 171 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++ e +++l+++k++ e r++R++ G++Le Lslk+LqqLe++Le +l++iRs+K e+ +++i+elq+k ++ een++Lr +l+e Pgl006542 81 QPTTLEFKSKDLKRIKQQFEDTSRNLRKMHGKELEGLSLKDLQQLEEELEMGLTSIRSQKVEHHVKEIKELQQKGIQMIEENTKLRGQLNE 171 5566788999****************************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.959 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.57E-35 | 2 | 69 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-29 | 3 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-23 | 13 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.806 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 9.4E-19 | 86 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MAREKIEIKR RANTSTRQVT FSKRRRGLFK KARELSILCE ADVALVVFSS TGKLYDYSSS 60 SMKVILDKYI LYHSTIQNDG QPTTLEFKSK DLKRIKQQFE DTSRNLRKMH GKELEGLSLK 120 DLQQLEEELE MGLTSIRSQK VEHHVKEIKE LQQKGIQMIE ENTKLRGQLN EGYGSLVENN 180 DGCESLFIEP LENQDPQSSE SINTYAFNFK LHNSPVKDPE DSVTSLQLGL SSHSEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_B | 5e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_C | 5e-19 | 1 | 73 | 1 | 73 | MEF2C |
5f28_D | 5e-19 | 1 | 73 | 1 | 73 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 25 | KRRANTSTRQVTFSKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.5538 | 0.0 | needle| root| stem| vegetative bud |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NM37 | 1e-165 | A9NM37_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-53 | MIKC_MADS family protein |