PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl006256 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C3H | ||||||||||||
Protein Properties | Length: 249aa MW: 28516.4 Da PI: 4.5891 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.1 | 4.7e-06 | 221 | 242 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+f+++ C++G++C+ +Hg Pgl006256 221 QICKFYLQ-QRCRFGSNCRMSHG 242 68******.**********8887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.774 | 217 | 244 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 217 | 243 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.43E-5 | 218 | 242 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
XVTVTTCMEF WCQNECKDYI NISARGPLER ILLGFISVPS IHLPPFCSEI WTRKGDGFLT 60 EAKLGLFFLS VNMAEEEEYD LEQQLECQLV EHRDSVTGVD EALAGDPENA ELLMVREELA 120 SAIKAAEEGL LHLKRSRLLR EVDSMEDLRT TPKLETADAG VKPLELTNVE PEPLEMVPFA 180 VGSKCRFRHI DGRWYNGQVI EMEYDKLARV SFLTPTSENM QICKFYLQQR CRFGSNCRMS 240 HGMCPCYWQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021689474.1 | 2e-65 | zinc finger CCCH domain-containing protein 18 | ||||
Swissprot | Q6K687 | 9e-63 | C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18 | ||||
TrEMBL | D5ADI7 | 1e-154 | D5ADI7_PICSI; Uncharacterized protein | ||||
STRING | cassava4.1_006222m | 2e-64 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24830.1 | 1e-52 | C3H family protein |
Publications ? help Back to Top | |||
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