PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl005027
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 306aa    MW: 34237.1 Da    PI: 6.2844
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55350294PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-34514PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000234971123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C+ C k F++   L  H++ H
  Pgl005027 49 YACTFCRKEFRSAQALGGHMNIH 71
               89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.72E-64675No hitNo description
Gene3DG3DSA:3.30.160.602.7E-44774IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-54972IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2614976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEEMPWTSGR PNSYQREDDH HGYSWEEQAF AEDAGGVMGG SSTWPPRSYA CTFCRKEFRS  60
AQALGGHMNI HRRDRARLRQ GIAIDININP ESNFAAFDHN HPRCELITPE PYYLYPETRP  120
HVGLMYHSNT AFSPDNSIVR LPHNSQPLPS GPIPSQPIAT FIPSISQPAS SFSSYPAAPS  180
TLLSMSPFSK TPYISSTNLF SSDSQTLQAP FDTISKDCSD SAGSAEANRW NTQTDSLFKD  240
ANMAIKAVES HHPETKEYVN GLDVMKITRC SKSESLDNMD DLDLELRLGE RPPVEKYRIG  300
KFKRGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-114471229superman protein
2l1o_A1e-114471229Transcriptional regulator SUPERMAN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.217420.0root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-23zinc-finger protein 10