PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004653
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 327aa    MW: 37053 Da    PI: 7.4981
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336175PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-47290PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-12188213126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                y   +C+++ +tG+C yGd CkF+H+
  Pgl004653 188 YQPDICKDYKETGYCGYGDACKFMHD 213
                67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.19E-9186218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577187215IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7187214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-12188218IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-10188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.1E-13246303IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578508.7E-13260302No hitNo description
PfamPF139202.0E-7260302No hitNo description
CDDcd001625.07E-7261300No hitNo description
SMARTSM001842.0E-4261298IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.498261299IPR001841Zinc finger, RING-type
PROSITE patternPS005180276285IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAETNETGPS QQQTCNFFKK PARNKNIRKR EVEEETEEGN NEGSAVVQKP KAAKKPDNKM  60
HFSSGPAKKS NIEGNDSETA GLPTSTFFYE SSKEIQVQND SRATATLETE TEFTKDARAI  120
RERVLKQGEE SLKGKNPGDE KLYKGIHGYT DHKAGFRREH TISGEKAGGA HGPLRASAHV  180
RSSIRFDYQP DICKDYKETG YCGYGDACKF MHDRGDYKSG WQMEREWQES EKKRKNNLAR  240
GLAEEDEEEA DSDEDALPFA CYICRQPFED PVVTRCKHYF CEHCALKHHA RNKNCYVCNK  300
ATNGVFNTAH EILRKMGEDK VGSTKNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-7213161317RING finger protein 113A
5z58_M1e-7213161317RING finger protein 113A
6ff4_t1e-7213161317RING finger protein 113A
6ff7_t1e-7213161317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.166170.0needle| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112176.11e-162zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-153C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLW9RK451e-158W9RK45_9ROSA; Zinc finger CCCH domain-containing protein 1
STRINGXP_010103154.11e-159(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-137C3H family protein