PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004467
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 337aa    MW: 37141.9 Da    PI: 4.1084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55348319PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-37032PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.6e-21353155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++y GVr++k +g+W+AeIrdps+     r +lg+f+taeeAa+a+++a++k++g
  Pgl004467  3 CRYEGVRRRK-WGKWAAEIRDPSK---GVRLWLGTFDTAEEAAQAYDEAARKIRG 53
               68*****998.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-33360No hitNo description
PfamPF008472.9E-14353IPR001471AP2/ERF domain
SMARTSM003802.5E-35467IPR001471AP2/ERF domain
PROSITE profilePS5103223.367461IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-22461IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-30461IPR001471AP2/ERF domain
PRINTSPR003673.5E-10516IPR001471AP2/ERF domain
PRINTSPR003673.5E-102743IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
KSCRYEGVRR RKWGKWAAEI RDPSKGVRLW LGTFDTAEEA AQAYDEAARK IRGPSAPTNF  60
LSKRSEIVDV EHPVSPKMPR KPVKKGIYDS GKEYYLSQTR SKGLDAKVSG KEYISAVLDG  120
PTEAADVLSS SSDFFSCISE ENLDASLVAS PSSVLEVSTL VCPEFEEELE HIFSFSGNLI  180
GLDVSGQLIE PSQQAGFSVQ CEGNHLPASQ QANSSEGSCF SSEVSNFPSV DDLLTTNYPD  240
GQNGEQQFNS IRQDNFLTFV IDSLLLSFFA TGEEHCYDDA HLSALEDNYF MEEFGQGFDI  300
SECGNEKDLA SLSNSIDLLD FDLDPEALEW MGLCDCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19560359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-18ERF family protein