PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl004180 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||||||
Protein Properties | Length: 352aa MW: 37862.7 Da PI: 8.3871 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12 | 0.0004 | 247 | 287 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +++ +++ L++l+ + +K + a++L +A+ YIk Lq Pgl004180 247 KVRKEKLGERITALQQLVSPF-----GKTDTASVLLEAMGYIKFLQ 287 667788899999******998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.528 | 237 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0035 | 241 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.81E-11 | 247 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.95E-6 | 247 | 291 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-7 | 247 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
XSTTSSVEIK DCWMNSPAAN DVSWTSNDVK ILPSSQHSRQ IAEQSRWIAS SSPFCSSSSC 60 NNNNNNTDNS NNNNNNNNAA GNRDAFCYGD GNAGKLLFRP ETFPCGPFTR LLDPSNNLPP 120 DSLELELEGF PASRKVSIPP VQLPGPLKAS ATFQSSNVLT FHSNMNKLEM PYTNPSPKPV 180 VVQQQKSGGS PSSSPSTSSS NNNLPKNTVD EGGECTTEQK RNSDQAGLSN TAFKKPRTEA 240 SAGAPMKVRK EKLGERITAL QQLVSPFGKT DTASVLLEAM GYIKFLQDQV QVLSSPYLKG 300 IPSNQKDGRG DQAKYDLRSR GLCLVPVSCT LHVANNNGAD FWTSGIGSGS KF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.1689 | 0.0 | needle| root| somatic embryo |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P269 | 0.0 | A9P269_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 2e-40 | bHLH family protein |