PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004142
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 354aa    MW: 39244.1 Da    PI: 7.2721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55338535PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-522PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-071535526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               lC+f+++ G C  G +C+F+H+
  Pgl004142 15 LCKFYMK-GRCAQGKQCSFSHD 35
               8******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8491037IPR000571Zinc finger, CCCH-type
SMARTSM003560.00111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-71135IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-51535IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-41535IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.7753963IPR000571Zinc finger, CCCH-type
SMARTSM003560.0433965IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2966492IPR000571Zinc finger, CCCH-type
SMARTSM003560.816791IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-1268109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
RFKLAPVTKS KPVILCKFYM KGRCAQGKQC SFSHDAVPAT KSEICKCHVN QCCLKGDECP  60
FSHDLSAFPC KFYHTRGYCL ERDKCRFSHK PITENALQDL LKQSELEKQE FREQKSTQGS  120
IQHFVANNPQ KLDEQSKYSV GDQFENVTCM EPSKSALGNK WQISEERSAS LAFQNPGKGT  180
LDEPSKTIFP EEPQISMEKE ASLCVSNMSP IPKHSRLSYD LGSGGINDAF FEARKSALNA  240
LAAVADHDAN LISRGLVRIP TFISSRDPGA NYLGSSGTGN EYVEAHEKGH GEHLVGGNHN  300
LPPSGLLNGS KSAIKILEEL ISGNEEFDIH NKYGNAFCLY PSTDTECKIN RDNR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.240810.0needle
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.25e-06C3H family protein