PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pgl003677 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||||||
Family | WRKY | ||||||||||||
Protein Properties | Length: 379aa MW: 43383.4 Da PI: 8.2112 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.1 | 3.3e-32 | 305 | 363 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver a+dp++v++tYeg+H+h+ Pgl003677 305 LDDGYKWRKYGQKVVKNTHHPRSYYRCTQNNCRVKKRVERLADDPRMVITTYEGRHTHS 363 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-34 | 290 | 363 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-29 | 297 | 363 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.344 | 300 | 362 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-38 | 305 | 364 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-25 | 306 | 362 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 379 aa Download sequence Send to blast |
XLNLYSSTGR NFLFVSHFCR SLSPLSLYSQ ANISFILQVP NIPLLFSSLL FSALYRSLGL 60 GFESQQEDKC KRRWKGHDLV CSDRSQLPRL VVALTANMPE SYGQINPFVS AECMQGYFLT 120 RPQHELVHSM HSFQETFHER SGVPEGELQP SNFASQSDNS DYCFLRPSQL KLSGNGEYPA 180 FSNRVSQDQA LLINSTEYND SQRGLISSPL GHAADQVSFS CTDTISHMDY RTNLPEISLL 240 RSTDDQSFDS SVQENAKRTE GLKNLSNLWW GASSSCDVKM KKVKVRRKLR EPRFCFQTMS 300 DVDVLDDGYK WRKYGQKVVK NTHHPRSYYR CTQNNCRVKK RVERLADDPR MVITTYEGRH 360 THSPCSDTQS EQHDFLSSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 297 | 362 | 9 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 297 | 362 | 9 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 283 | 289 | KVRRKLR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pgl.21334 | 0.0 | stem |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | D5AE58 | 0.0 | D5AE58_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44745.1 | 4e-50 | WRKY family protein |