PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003293
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 404aa    MW: 44301.9 Da    PI: 8.7107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S29748139PU_unrefUnigeneView CDS
gnl|UG|Pgl#S55335755PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-20308PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07108128526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C+++++ G C++G+ Ck+ H+
  Pgl003293 108 VCNYWLA-GNCQHGEECKYLHS 128
                7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.1451844IPR000571Zinc finger, CCCH-type
SMARTSM003560.011943IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5102128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-7104128IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5105129IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5108128IPR000571Zinc finger, CCCH-type
SMARTSM003200.4134184IPR001680WD40 repeat
SuperFamilySSF509782.56E-43135397IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.0E-39136399IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.012138169IPR001680WD40 repeat
PROSITE profilePS5029420.092141363IPR017986WD40-repeat-containing domain
SMARTSM0032015186223IPR001680WD40 repeat
SMARTSM003201.6E-5230267IPR001680WD40 repeat
PfamPF004004.5E-4234267IPR001680WD40 repeat
PROSITE profilePS5008212.48237276IPR001680WD40 repeat
PRINTSPR003202.4E-5254268IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780254268IPR019775WD40 repeat, conserved site
SMARTSM003203.2E-4270307IPR001680WD40 repeat
PfamPF004000.0051272306IPR001680WD40 repeat
PRINTSPR003202.4E-5294308IPR020472G-protein beta WD-40 repeat
SMARTSM003202311354IPR001680WD40 repeat
PRINTSPR003202.4E-5341355IPR020472G-protein beta WD-40 repeat
SMARTSM0032031357394IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDVEISGKHT GNKRTYTRLP RQVCVFWQEG RCNRESCNFL HVGEPGSVKR GGATNGFAPK  60
RSYNGSDERE MQAAGPPGGS RRNTSARWGR GRGGRFISDE RQKIRNKVCN YWLAGNCQHG  120
EECKYLHSFV MGSDVKFLTQ LSGHVKAIRG IAFPPESGKL YSGGQDKKVH GXFVGLPNAI  180
KAWNTSTSTE LSLVGPRGQV HALAVGNGML WAGTHDGSIL AWKFSPAANT FEPAASLVGH  240
TQPVVSLVSG ADRLYSGSMD KTIRVWDLGT FQCIQTLRDH TSVVMSLLCW DQFLLSCSLD  300
NTVKVWVATP SGALEVTYTH NEEHGVLALC GMNDEQAKPV LLCSCNDNTV RLYDLPSFNE  360
RGRIFSRNEV RAFQIGPGGL FFTGDGMGEL KVWNWATQTS CGNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-1613839710323Tako8
6g6n_A5e-1613839710323Tako8
6g6n_B5e-1613839710323Tako8
6g6n_C5e-1613839710323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.18310.0cone| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857936.11e-174zinc finger CCCH domain-containing protein 17
RefseqXP_011628379.11e-174zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP51e-148C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0D6QSM00.0A0A0D6QSM0_ARACU; Uncharacterized protein
STRINGERN194031e-174(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-150C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]